CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
Carubv10020979m.g
(
Capsella rubella
)
MADS box
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00319 (SRF-TF)
IPR002100
Carubv10020979m.g
T257793_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
AGL27
M08145_2.00
Arabidopsis thaliana
MCMAAAATRGAAAB
VTTTCYATTTTKGK
ChIP-seq
Mathelier et al.(2014)
MA1012.1
0.957
0.957
FLC
M06990_2.00
Arabidopsis thaliana
WWDMYNDWWWWGGAAASW
WSTTTCCWWWWHNRKHWW
Dap-seq
OMalley et al.(2016)
AGL25_col_a
0.872
0.872
FLC
M06991_2.00
Arabidopsis thaliana
WCYHAAAAWGGAAAS
STTTCCWTTTTDRGW
Dap-seq
OMalley et al.(2016)
AGL25_colamp_a
0.872
0.872
FLC
M08147_2.00
Arabidopsis thaliana
NNWWDCYVAAAWWRGAAAVHH
DDBTTTCYWWTTTBRGHWWNN
ChIP-seq
Mathelier et al.(2014)
MA0558.1
0.872
0.872
AGL15
M06992_2.00
Arabidopsis thaliana
WNTTWCCHAAWDWRGAAAN
NTTTCYWHWTTDGGWAANW
Dap-seq
OMalley et al.(2016)
AGL15_col_a
0.702
0.702
AGL15
M06993_2.00
Arabidopsis thaliana
DNTTWCCHAAWDDRGAAANHH
DDNTTTCYHHWTTDGGWAANH
Dap-seq
OMalley et al.(2016)
AGL15_colamp_a
0.702
0.702
AGL15
M10927_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AGL15_01
0.702
0.702
AGL15
M10928_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AGL15_02
0.702
0.702
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Carubv10020979m
MADS box
10
56
RIENKSSRQVTFSKRRNGLIDKARQLSILCDSSVAVVVVSASGKLYN
Links
Other
MADS box
family TFs
Other
Capsella rubella
TFs
54 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Cagra.0450s0030
Capsella grandiflora
Cagra.0450s0030
I
1.000
AGL27
Arabidopsis thaliana
AT1G77080
D
0.957
MAF1
Arabidopsis lyrata
fgenesh2_kg.2__2000__AT1G77080.2
I
0.957
Bra028599
Brassica rapa
Bra028599
I
0.875
AGL31
Arabidopsis thaliana
AT5G65050
I
0.872
Bo3g100570
Brassica oleracea
Bo3g100570
I
0.872
Bra024350
Brassica rapa
Bra024350
I
0.872
Bra031888
Brassica rapa
Bra031888
I
0.872
Bostr.0568s0285
Boechera stricta
Bostr.0568s0285
I
0.872
FLC
Arabidopsis thaliana
AT5G10140
D
0.854
Bra009055
Brassica rapa
Bra009055
I
0.854
FLC
Arabidopsis lyrata
scaffold_601028.1
I
0.854
Bostr.13175s0088
Boechera stricta
Bostr.13175s0088
I
0.854
Bostr.18351s0063
Boechera stricta
Bostr.18351s0063
I
0.854
Cagra.1085s0045
Capsella grandiflora
Cagra.1085s0045
I
0.854
Thhalv10014726m.g
Eutrema salsugineum
Thhalv10014726m.g
I
0.854
MAF3
Arabidopsis thaliana
AT5G65060
I
0.851
Bo2g166500
Brassica oleracea
Bo2g166500
I
0.851
fgenesh2_kg.233__4__AT5G65050.3
Arabidopsis lyrata
fgenesh2_kg.233__4__AT5G65050.3
I
0.851
fgenesh2_kg.8__2543__AT5G65050.2
Arabidopsis lyrata
fgenesh2_kg.8__2543__AT5G65050.2
I
0.851
Cagra.0917s0081
Capsella grandiflora
Cagra.0917s0081
I
0.851
Bo9g173370
Brassica oleracea
Bo9g173370
I
0.833
Bo13628s010
Brassica oleracea
Bo13628s010
I
0.812
Bo9g173400
Brassica oleracea
Bo9g173400
I
0.812
Bra006051
Brassica rapa
Bra006051
I
0.812
MAF5
Arabidopsis thaliana
AT5G65080
I
0.809
Thhalv10005413m.g
Eutrema salsugineum
Thhalv10005413m.g
I
0.791
Bo3g005470
Brassica oleracea
Bo3g005470
I
0.787
Bra024351
Brassica rapa
Bra024351
I
0.787
Bra031884
Brassica rapa
Bra031884
I
0.787
Thhalv10004949m.g
Eutrema salsugineum
Thhalv10004949m.g
I
0.787
Cagra.0917s0080
Capsella grandiflora
Cagra.0917s0080
I
0.771
Bo01054s010
Brassica oleracea
Bo01054s010
I
0.766
Bo3g100540
Brassica oleracea
Bo3g100540
I
0.766
Bra031886
Brassica rapa
Bra031886
I
0.766
Traes_4BL_9A17EA3B7
Triticum aestivum
Traes_4BL_9A17EA3B7
I
0.759
MAF4
Arabidopsis lyrata
Al_scaffold_0008_3055
I
0.750
MAF4
Arabidopsis thaliana
AT5G65070
I
0.750
Bo3g024250
Brassica oleracea
Bo3g024250
I
0.750
Aquca_032_00047
Aquilegia coerulea
Aquca_032_00047
I
0.750
Carubv10028173m.g
Capsella rubella
Carubv10028173m.g
I
0.750
Bra022771
Brassica rapa
Bra022771
I
0.729
evm.TU.contig_33612
Carica papaya
evm.TU.contig_33612
I
0.729
POPTR_0001s13660
Populus trichocarpa
POPTR_0001s13660
I
0.708
POPTR_0003s16840
Populus trichocarpa
POPTR_0003s16840
I
0.708
POPTR_0003s16870
Populus trichocarpa
POPTR_0003s16870
I
0.708
POPTR_0006s04730
Populus trichocarpa
POPTR_0006s04730
I
0.708
cassava15798.m1
Manihot esculenta
cassava15798.m1
I
0.708
Aquca_003_00853
Aquilegia coerulea
Aquca_003_00853
I
0.708
Aquca_005_00633
Aquilegia coerulea
Aquca_005_00633
I
0.708
Cagra.0917s0078
Capsella grandiflora
Cagra.0917s0078
I
0.708
SapurV1A.0068s0650
Salix purpurea
SapurV1A.0068s0650
I
0.708
AGL15
Arabidopsis thaliana
AT5G13790
D
0.702
GLYMA08G11110
Glycine max
GLYMA08G11110
I
0.702