Carubv10020979m.g (Capsella rubella)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 Carubv10020979m.g T257793_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AGL27
M08145_2.00 		Arabidopsis thaliana
MCMAAAATRGAAAB
VTTTCYATTTTKGK		 ChIP-seq
Mathelier et al.(2014)
MA1012.1 		0.957 0.957
FLC
M06990_2.00 		Arabidopsis thaliana
WWDMYNDWWWWGGAAASW
WSTTTCCWWWWHNRKHWW		 Dap-seq
OMalley et al.(2016)
AGL25_col_a 		0.872 0.872
FLC
M06991_2.00 		Arabidopsis thaliana
WCYHAAAAWGGAAAS
STTTCCWTTTTDRGW		 Dap-seq
OMalley et al.(2016)
AGL25_colamp_a 		0.872 0.872
FLC
M08147_2.00 		Arabidopsis thaliana
NNWWDCYVAAAWWRGAAAVHH
DDBTTTCYWWTTTBRGHWWNN		 ChIP-seq
Mathelier et al.(2014)
MA0558.1 		0.872 0.872
AGL15
M06992_2.00 		Arabidopsis thaliana
WNTTWCCHAAWDWRGAAAN
NTTTCYWHWTTDGGWAANW		 Dap-seq
OMalley et al.(2016)
AGL15_col_a 		0.702 0.702
AGL15
M06993_2.00 		Arabidopsis thaliana
DNTTWCCHAAWDDRGAAANHH
DDNTTTCYHHWTTDGGWAANH		 Dap-seq
OMalley et al.(2016)
AGL15_colamp_a 		0.702 0.702
AGL15
M10927_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AGL15_01 		0.702 0.702
AGL15
M10928_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AGL15_02 		0.702 0.702
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10020979m MADS box 10 56

Links

Other MADS box family TFs
Other Capsella rubella TFs

54 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
MAF4 Arabidopsis lyrata Al_scaffold_0008_3055 I 0.750
Aquca_003_00853 Aquilegia coerulea Aquca_003_00853 I 0.708
Aquca_005_00633 Aquilegia coerulea Aquca_005_00633 I 0.708
Aquca_032_00047 Aquilegia coerulea Aquca_032_00047 I 0.750
AGL27 Arabidopsis thaliana AT1G77080 D 0.957
FLC Arabidopsis thaliana AT5G10140 D 0.854
AGL15 Arabidopsis thaliana AT5G13790 D 0.702
AGL31 Arabidopsis thaliana AT5G65050 I 0.872
MAF3 Arabidopsis thaliana AT5G65060 I 0.851
MAF4 Arabidopsis thaliana AT5G65070 I 0.750
MAF5 Arabidopsis thaliana AT5G65080 I 0.809
Bo01054s010 Brassica oleracea Bo01054s010 I 0.766
Bo13628s010 Brassica oleracea Bo13628s010 I 0.812
Bo2g166500 Brassica oleracea Bo2g166500 I 0.851
Bo3g005470 Brassica oleracea Bo3g005470 I 0.787
Bo3g024250 Brassica oleracea Bo3g024250 I 0.750
Bo3g100540 Brassica oleracea Bo3g100540 I 0.766
Bo3g100570 Brassica oleracea Bo3g100570 I 0.872
Bo9g173370 Brassica oleracea Bo9g173370 I 0.833
Bo9g173400 Brassica oleracea Bo9g173400 I 0.812
Bostr.0568s0285 Boechera stricta Bostr.0568s0285 I 0.872
Bostr.13175s0088 Boechera stricta Bostr.13175s0088 I 0.854
Bostr.18351s0063 Boechera stricta Bostr.18351s0063 I 0.854
Bra006051 Brassica rapa Bra006051 I 0.812
Bra009055 Brassica rapa Bra009055 I 0.854
Bra022771 Brassica rapa Bra022771 I 0.729
Bra024350 Brassica rapa Bra024350 I 0.872
Bra024351 Brassica rapa Bra024351 I 0.787
Bra028599 Brassica rapa Bra028599 I 0.875
Bra031884 Brassica rapa Bra031884 I 0.787
Bra031886 Brassica rapa Bra031886 I 0.766
Bra031888 Brassica rapa Bra031888 I 0.872
Cagra.0450s0030 Capsella grandiflora Cagra.0450s0030 I 1.000
Cagra.0917s0078 Capsella grandiflora Cagra.0917s0078 I 0.708
Cagra.0917s0080 Capsella grandiflora Cagra.0917s0080 I 0.771
Cagra.0917s0081 Capsella grandiflora Cagra.0917s0081 I 0.851
Cagra.1085s0045 Capsella grandiflora Cagra.1085s0045 I 0.854
Carubv10028173m.g Capsella rubella Carubv10028173m.g I 0.750
cassava15798.m1 Manihot esculenta cassava15798.m1 I 0.708
evm.TU.contig_33612 Carica papaya evm.TU.contig_33612 I 0.729
fgenesh2_kg.233__4__AT5G65050.3 Arabidopsis lyrata fgenesh2_kg.233__4__AT5G65050.3 I 0.851
MAF1 Arabidopsis lyrata fgenesh2_kg.2__2000__AT1G77080.2 I 0.957
fgenesh2_kg.8__2543__AT5G65050.2 Arabidopsis lyrata fgenesh2_kg.8__2543__AT5G65050.2 I 0.851
GLYMA08G11110 Glycine max GLYMA08G11110 I 0.702
POPTR_0001s13660 Populus trichocarpa POPTR_0001s13660 I 0.708
POPTR_0003s16840 Populus trichocarpa POPTR_0003s16840 I 0.708
POPTR_0003s16870 Populus trichocarpa POPTR_0003s16870 I 0.708
POPTR_0006s04730 Populus trichocarpa POPTR_0006s04730 I 0.708
SapurV1A.0068s0650 Salix purpurea SapurV1A.0068s0650 I 0.708
FLC Arabidopsis lyrata scaffold_601028.1 I 0.854
Thhalv10004949m.g Eutrema salsugineum Thhalv10004949m.g I 0.787
Thhalv10005413m.g Eutrema salsugineum Thhalv10005413m.g I 0.791
Thhalv10014726m.g Eutrema salsugineum Thhalv10014726m.g I 0.854
Traes_4BL_9A17EA3B7 Triticum aestivum Traes_4BL_9A17EA3B7 I 0.759