CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
Carubv10021762m.g
(
Capsella rubella
)
MADS box
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00319 (SRF-TF)
IPR002100
Carubv10021762m.g
T257805_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Carubv10021762m
MADS box
10
54
LIIDNATRRVTFRKRKAGLLKKINELTILCGLPACAIIYSEYKDG
Links
Other
MADS box
family TFs
Other
Capsella rubella
TFs
14 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Bostr.12659s0111
Boechera stricta
Bostr.12659s0111
N
0.930
Carubv10021360m.g
Capsella rubella
Carubv10021360m.g
N
0.930
Carubv10022252m.g
Capsella rubella
Carubv10022252m.g
N
0.930
AGL87
Arabidopsis thaliana
AT1G22590
N
0.907
Cagra.0114s0045
Capsella grandiflora
Cagra.0114s0045
N
0.907
Cagra.2356s0007
Capsella grandiflora
Cagra.2356s0007
N
0.907
Carubv10006189m.g
Capsella rubella
Carubv10006189m.g
N
0.907
Carubv10011303m.g
Capsella rubella
Carubv10011303m.g
N
0.907
Carubv10021540m.g
Capsella rubella
Carubv10021540m.g
N
0.907
Bo7g057820
Brassica oleracea
Bo7g057820
N
0.837
Bra024521
Brassica rapa
Bra024521
N
0.837
Bo5g038690
Brassica oleracea
Bo5g038690
N
0.778
Bra012335
Brassica rapa
Bra012335
N
0.756
Thhalv10008961m.g
Eutrema salsugineum
Thhalv10008961m.g
N
0.756