CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Carubv10022052m.g
(
Capsella rubella
)
MADS box
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00319 (SRF-TF)
IPR002100
Carubv10022052m.g
T257810_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Carubv10022052m
MADS box
16
63
KIERSKDRLVTLSKRRNGIYTKLCELSVLCRIHIAFLGYTDSGKPFTF
Links
Other
MADS box
family TFs
Other
Capsella rubella
TFs
23 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Carubv10022431m.g
Capsella rubella
Carubv10022431m.g
N
1.000
Carubv10021725m.g
Capsella rubella
Carubv10021725m.g
N
0.958
Carubv10022123m.g
Capsella rubella
Carubv10022123m.g
N
0.958
Carubv10021362m.g
Capsella rubella
Carubv10021362m.g
N
0.941
Carubv10021446m.g
Capsella rubella
Carubv10021446m.g
N
0.938
Carubv10021425m.g
Capsella rubella
Carubv10021425m.g
N
0.896
Carubv10021267m.g
Capsella rubella
Carubv10021267m.g
N
0.889
Carubv10021838m.g
Capsella rubella
Carubv10021838m.g
N
0.854
Carubv10011216m.g
Capsella rubella
Carubv10011216m.g
N
0.833
Cagra.18025s0001
Capsella grandiflora
Cagra.18025s0001
N
0.812
Cagra.5647s0017
Capsella grandiflora
Cagra.5647s0017
N
0.812
Carubv10002683m.g
Capsella rubella
Carubv10002683m.g
N
0.812
Carubv10002712m.g
Capsella rubella
Carubv10002712m.g
N
0.792
Carubv10012214m.g
Capsella rubella
Carubv10012214m.g
N
0.792
Carubv10010430m.g
Capsella rubella
Carubv10010430m.g
N
0.771
Carubv10010438m.g
Capsella rubella
Carubv10010438m.g
N
0.771
Carubv10010833m.g
Capsella rubella
Carubv10010833m.g
N
0.771
Carubv10012479m.g
Capsella rubella
Carubv10012479m.g
N
0.771
AGL64
Arabidopsis thaliana
AT1G29962
N
0.750
AGL85
Arabidopsis lyrata
fgenesh1_pg.C_scaffold_1002660
N
0.750
Bostr.15697s0292
Boechera stricta
Bostr.15697s0292
N
0.750
Cagra.12398s0004
Capsella grandiflora
Cagra.12398s0004
N
0.750
Carubv10002787m.g
Capsella rubella
Carubv10002787m.g
N
0.727