CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Ciclev10002422m.g
(
Citrus clementina
)
MADS box
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00319 (SRF-TF)
IPR002100
Ciclev10002422m.g
T257848_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
MADS2_PETHY
M10998_2.00
Petunia x hybrida
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS2_01
0.875
0.875
Q9AVU7_MALDO
M11027_2.00
Malus domestica
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$PI_01
0.833
0.833
FBP1_PETHY
M10996_2.00
Petunia x hybrida
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$FBP1_01
0.812
0.812
PI
M08148_2.00
Arabidopsis thaliana
MCMAAARWRGAAAR
YTTTCYWYTTTKGK
ChIP-seq
Mathelier et al.(2014)
MA0559.1
0.792
0.792
AP3
M08146_2.00
Arabidopsis thaliana
WDCCMAAARWRGHAA
TTDCYWYTTTKGGHW
ChIP-seq
Mathelier et al.(2014)
MA0556.1
0.708
0.708
MAD14_ORYSJ
M10960_2.00
Oryza sativa
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS14_01
0.708
0.708
Q9ZRA5_MALDO
M11030_2.00
Malus domestica
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS2_04
0.708
0.708
AP3
M10919_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADSB_Q2
0.708
0.708
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Ciclev10002422m
MADS box
10
57
RIENLSNRQVTYSKRRNGLIKKAKEIAVLCDAKVSLIIFATSGKMHDY
Links
Other
MADS box
family TFs
Other
Citrus clementina
TFs
124 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
orange1.1g042044m.g
Citrus sinensis
orange1.1g042044m.g
I
1.000
cassava33721.m1
Manihot esculenta
cassava33721.m1
I
0.896
evm.TU.supercontig_26.316
Carica papaya
evm.TU.supercontig_26.316
I
0.896
Lus10029719.g
Linum usitatissimum
Lus10029719.g
I
0.896
Lus10042749.g
Linum usitatissimum
Lus10042749.g
I
0.896
Ca_13111
Cicer arietinum
Ca_13111
I
0.875
MADS2_PETHY
Petunia x hybrida
MADS2_PETHY
D
0.875
29648.m001978
Ricinus communis
29648.m001978
I
0.875
Ciclev10002471m.g
Citrus clementina
Ciclev10002471m.g
I
0.875
gene11268-v1.0-hybrid
Fragaria vesca
gene11268-v1.0-hybrid
I
0.875
Gorai.005G087600
Gossypium raimondii
Gorai.005G087600
I
0.875
orange1.1g040096m.g
Citrus sinensis
orange1.1g040096m.g
I
0.875
GLYMA13G09660
Glycine max
GLYMA13G09660
I
0.854
GLYMA14G24590
Glycine max
GLYMA14G24590
I
0.854
PRUPE_ppa012927mg
Prunus persica
PRUPE_ppa012927mg
I
0.854
Solyc06g059970.2
Solanum lycopersicum
Solyc06g059970.2
I
0.854
TCM_035212
Theobroma cacao
TCM_035212
I
0.854
Cla023547
Citrullus lanatus
Cla023547
I
0.854
Pm004718
Prunus mume
Pm004718
I
0.854
cassava32003.m1
Manihot esculenta
cassava32003.m1
I
0.854
Cucsa.018420
Cucumis sativus
Cucsa.018420
I
0.854
LjSGA_047687.2
Lotus japonicus
LjSGA_047687.2
I
0.854
PGSC0003DMG401007392
Solanum tuberosum
PGSC0003DMG401007392
I
0.833
Solyc08g067230.2
Solanum lycopersicum
Solyc08g067230.2
I
0.833
PI
Vitis vinifera
VIT_18s0001g01760
I
0.833
Eucgr.E01006
Eucalyptus grandis
Eucgr.E01006
I
0.833
Eucgr.E01007
Eucalyptus grandis
Eucgr.E01007
I
0.833
gene11267-v1.0-hybrid
Fragaria vesca
gene11267-v1.0-hybrid
I
0.833
Gorai.002G223100
Gossypium raimondii
Gorai.002G223100
I
0.833
Q9AVU7_MALDO
Malus domestica
Q9AVU7_MALDO
D
0.833
GLYMA04G42420
Glycine max
GLYMA04G42420
I
0.812
GLYMA06G12380
Glycine max
GLYMA06G12380
I
0.812
POPTR_0002s07920
Populus trichocarpa
POPTR_0002s07920
I
0.812
POPTR_0005s20480
Populus trichocarpa
POPTR_0005s20480
I
0.812
FBP1_PETHY
Petunia x hybrida
FBP1_PETHY
D
0.812
mgf003143m
Mimulus guttatus
mgf003143m
I
0.812
mgf006158m
Mimulus guttatus
mgf006158m
I
0.812
mgf008207m
Mimulus guttatus
mgf008207m
I
0.812
PI
Arabidopsis thaliana
AT5G20240
D
0.792
Bo3g010390
Brassica oleracea
Bo3g010390
I
0.792
PI
Arabidopsis lyrata
fgenesh2_kg.6__2063__AT5G20240.1
I
0.792
MTR_3g088615
Medicago truncatula
MTR_3g088615
I
0.792
Ca_03887
Cicer arietinum
Ca_03887
I
0.792
Bostr.26527s0175
Boechera stricta
Bostr.26527s0175
I
0.792
Cagra.0179s0008
Capsella grandiflora
Cagra.0179s0008
I
0.792
Carubv10001962m.g
Capsella rubella
Carubv10001962m.g
I
0.792
SapurV1A.0829s0180
Salix purpurea
SapurV1A.0829s0180
I
0.792
Thhalv10014683m.g
Eutrema salsugineum
Thhalv10014683m.g
I
0.792
Bo2g020730
Brassica oleracea
Bo2g020730
I
0.771
Bo3g014100
Brassica oleracea
Bo3g014100
I
0.771
Bo9g152080
Brassica oleracea
Bo9g152080
I
0.771
Bra002285
Brassica rapa
Bra002285
I
0.771
Bra006549
Brassica rapa
Bra006549
I
0.771
Bra020093
Brassica rapa
Bra020093
I
0.771
MTR_1g029670
Medicago truncatula
MTR_1g029670
I
0.771
cassava37821.valid.m1
Manihot esculenta
cassava37821.valid.m1
I
0.750
cassava37822.valid.m1
Manihot esculenta
cassava37822.valid.m1
I
0.750
cassava41235.m1
Manihot esculenta
cassava41235.m1
I
0.750
GLYMA04G02980
Glycine max
GLYMA04G02980
I
0.729
GLYMA06G02990
Glycine max
GLYMA06G02990
I
0.729
GSMUA_Achr6G18670_001
Musa acuminata
GSMUA_Achr6G18670_001
I
0.729
MTR_3g113030
Medicago truncatula
MTR_3g113030
I
0.729
PRUPE_ppa026083mg
Prunus persica
PRUPE_ppa026083mg
I
0.729
VIT_04s0023g02820
Vitis vinifera
VIT_04s0023g02820
I
0.729
Ca_04909
Cicer arietinum
Ca_04909
I
0.729
Cla021117
Citrullus lanatus
Cla021117
I
0.729
Pm006266
Prunus mume
Pm006266
I
0.729
Cucsa.342790
Cucumis sativus
Cucsa.342790
I
0.729
orange1.1g027470m.g
Citrus sinensis
orange1.1g027470m.g
I
0.729
chr1.CM0195.210.nc
Lotus japonicus
chr1.CM0195.210.nc
I
0.729
OPUNC09G14150
Oryza punctata
OPUNC09G14150
I
0.727
Traes_7BL_7F4124E70
Triticum aestivum
Traes_7BL_7F4124E70
I
0.720
gene26118-v1.0-hybrid
Fragaria vesca
gene26118-v1.0-hybrid
I
0.714
AMTR_s00001p00217560
Amborella trichopoda
AMTR_s00001p00217560
I
0.708
AMTR_s00066p00109320
Amborella trichopoda
AMTR_s00066p00109320
I
0.708
AP3
Arabidopsis thaliana
AT3G54340
D
0.708
BGIOSGA009798
Oryza indica
BGIOSGA009798
I
0.708
BRADI1G21980
Brachypodium distachyon
BRADI1G21980
I
0.708
AP3
Arabidopsis lyrata
fgenesh2_kg.5__1825__AT3G54340.1
I
0.708
GLYMA01G37470
Glycine max
GLYMA01G37470
I
0.708
GLYMA05G07380
Glycine max
GLYMA05G07380
I
0.708
GLYMA11G07820
Glycine max
GLYMA11G07820
I
0.708
GLYMA17G08890
Glycine max
GLYMA17G08890
I
0.708
GRMZM2G032339
Zea mays
GRMZM2G032339
I
0.708
GRMZM2G147716
Zea mays
GRMZM2G147716
I
0.708
GRMZM2G553379
Zea mays
GRMZM2G553379
I
0.708
GSMUA_Achr3G02280_001
Musa acuminata
GSMUA_Achr3G02280_001
I
0.708
GSMUA_Achr4G23540_001
Musa acuminata
GSMUA_Achr4G23540_001
I
0.708
GSMUA_Achr7G00460_001
Musa acuminata
GSMUA_Achr7G00460_001
I
0.708
MAD14_ORYSJ
Oryza sativa
MAD14_ORYSJ
D
0.708
MTR_4g109830
Medicago truncatula
MTR_4g109830
I
0.708
MTR_5g021270
Medicago truncatula
MTR_5g021270
I
0.708
MTR_5g046790
Medicago truncatula
MTR_5g046790
I
0.708
OB03G41490
Oryza brachyantha
OB03G41490
I
0.708
OBART03G34520
Oryza barthii
OBART03G34520
I
0.708
OLONG_010503
Oryza longistaminata
OLONG_010503
I
0.708
OMERI03G31620
Oryza meridionalis
OMERI03G31620
I
0.708
ONIVA03G35980
Oryza nivara
ONIVA03G35980
I
0.708
OPUNC03G31590
Oryza punctata
OPUNC03G31590
I
0.708
ORGLA03G0314900
Oryza glaberrima
ORGLA03G0314900
I
0.708
ORUFI03G35930
Oryza rufipogon
ORUFI03G35930
I
0.708
OS03G0752800
Oryza sativa
OS03G0752800
I
0.708
Sb01g007790
Sorghum bicolor
Sb01g007790
I
0.708
Sb02g038780
Sorghum bicolor
Sb02g038780
I
0.708
Si030896m.g
Setaria italica
Si030896m.g
I
0.708
TCM_000266
Theobroma cacao
TCM_000266
I
0.708
Ca_01994
Cicer arietinum
Ca_01994
I
0.708
cassava21176.m1
Manihot esculenta
cassava21176.m1
I
0.708
cassava33649.m1
Manihot esculenta
cassava33649.m1
I
0.708
cassava46263.m1
Manihot esculenta
cassava46263.m1
I
0.708
Aquca_002_00911
Aquilegia coerulea
Aquca_002_00911
I
0.708
Bostr.0697s0046
Boechera stricta
Bostr.0697s0046
I
0.708
Cagra.0562s0025
Capsella grandiflora
Cagra.0562s0025
I
0.708
Carubv10018833m.g
Capsella rubella
Carubv10018833m.g
I
0.708
Ciclev10026433m.g
Citrus clementina
Ciclev10026433m.g
I
0.708
Gorai.003G011500
Gossypium raimondii
Gorai.003G011500
I
0.708
Gorai.008G064900
Gossypium raimondii
Gorai.008G064900
I
0.708
Lus10033187.g
Linum usitatissimum
Lus10033187.g
I
0.708
MDP0000289836
Malus domestica
MDP0000289836
I
0.708
Pavir.Ia00530
Panicum virgatum
Pavir.Ia00530
I
0.708
Pavir.J03093
Panicum virgatum
Pavir.J03093
I
0.708
Q9ZRA5_MALDO
Malus domestica
Q9ZRA5_MALDO
D
0.708
chr2.CM0249.370.nd
Lotus japonicus
chr2.CM0249.370.nd
I
0.708
Pm026712
Prunus mume
Pm026712
I
0.702