Eucgr.E01007 (Eucalyptus grandis)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 Eucgr.E01007 T257945_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
MADS2_PETHY
M10998_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS2_01 		0.854 0.854
Q9AVU7_MALDO
M11027_2.00 		Malus domestica Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$PI_01 		0.792 0.792
FBP1_PETHY
M10996_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FBP1_01 		0.771 0.771
PI
M08148_2.00 		Arabidopsis thaliana
MCMAAARWRGAAAR
YTTTCYWYTTTKGK		 ChIP-seq
Mathelier et al.(2014)
MA0559.1 		0.729 0.729
AP3
M08146_2.00 		Arabidopsis thaliana
WDCCMAAARWRGHAA
TTDCYWYTTTKGGHW		 ChIP-seq
Mathelier et al.(2014)
MA0556.1 		0.708 0.708
AP3
M10919_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADSB_Q2 		0.708 0.708
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Eucgr.E01007.1 MADS box 10 57

Links

Other MADS box family TFs
Other Eucalyptus grandis TFs

86 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Solyc06g059970.2 Solanum lycopersicum Solyc06g059970.2 I 0.875
Eucgr.E01006 Eucalyptus grandis Eucgr.E01006 I 0.875
MADS2_PETHY Petunia x hybrida MADS2_PETHY D 0.854
Ciclev10002422m.g Citrus clementina Ciclev10002422m.g I 0.833
orange1.1g042044m.g Citrus sinensis orange1.1g042044m.g I 0.833
GLYMA04G42420 Glycine max GLYMA04G42420 I 0.812
GLYMA06G12380 Glycine max GLYMA06G12380 I 0.812
29648.m001978 Ricinus communis 29648.m001978 I 0.812
cassava33721.m1 Manihot esculenta cassava33721.m1 I 0.812
evm.TU.supercontig_26.316 Carica papaya evm.TU.supercontig_26.316 I 0.812
Gorai.002G223100 Gossypium raimondii Gorai.002G223100 I 0.812
Gorai.005G087600 Gossypium raimondii Gorai.005G087600 I 0.812
MTR_3g088615 Medicago truncatula MTR_3g088615 I 0.792
PRUPE_ppa012927mg Prunus persica PRUPE_ppa012927mg I 0.792
TCM_035212 Theobroma cacao TCM_035212 I 0.792
Ca_03887 Cicer arietinum Ca_03887 I 0.792
Cla023547 Citrullus lanatus Cla023547 I 0.792
Pm004718 Prunus mume Pm004718 I 0.792
cassava32003.m1 Manihot esculenta cassava32003.m1 I 0.792
Cucsa.018420 Cucumis sativus Cucsa.018420 I 0.792
gene11267-v1.0-hybrid Fragaria vesca gene11267-v1.0-hybrid I 0.792
Lus10029719.g Linum usitatissimum Lus10029719.g I 0.792
Lus10042749.g Linum usitatissimum Lus10042749.g I 0.792
Q9AVU7_MALDO Malus domestica Q9AVU7_MALDO D 0.792
PGSC0003DMG401007392 Solanum tuberosum PGSC0003DMG401007392 I 0.771
Solyc08g067230.2 Solanum lycopersicum Solyc08g067230.2 I 0.771
PI Vitis vinifera VIT_18s0001g01760 I 0.771
Ca_13111 Cicer arietinum Ca_13111 I 0.771
FBP1_PETHY Petunia x hybrida FBP1_PETHY D 0.771
mgf003143m Mimulus guttatus mgf003143m I 0.771
mgf006158m Mimulus guttatus mgf006158m I 0.771
mgf008207m Mimulus guttatus mgf008207m I 0.771
Ciclev10002471m.g Citrus clementina Ciclev10002471m.g I 0.771
gene11268-v1.0-hybrid Fragaria vesca gene11268-v1.0-hybrid I 0.771
orange1.1g040096m.g Citrus sinensis orange1.1g040096m.g I 0.771
GLYMA13G09660 Glycine max GLYMA13G09660 I 0.750
GLYMA14G24590 Glycine max GLYMA14G24590 I 0.750
POPTR_0002s07920 Populus trichocarpa POPTR_0002s07920 I 0.750
POPTR_0005s20480 Populus trichocarpa POPTR_0005s20480 I 0.750
LjSGA_047687.2 Lotus japonicus LjSGA_047687.2 I 0.750
PI Arabidopsis thaliana AT5G20240 D 0.729
Bo3g010390 Brassica oleracea Bo3g010390 I 0.729
PI Arabidopsis lyrata fgenesh2_kg.6__2063__AT5G20240.1 I 0.729
GLYMA01G37470 Glycine max GLYMA01G37470 I 0.729
GLYMA06G02990 Glycine max GLYMA06G02990 I 0.729
GLYMA11G07820 Glycine max GLYMA11G07820 I 0.729
MTR_3g113030 Medicago truncatula MTR_3g113030 I 0.729
MTR_5g021270 Medicago truncatula MTR_5g021270 I 0.729
Ca_01994 Cicer arietinum Ca_01994 I 0.729
Ca_04909 Cicer arietinum Ca_04909 I 0.729
Bostr.26527s0175 Boechera stricta Bostr.26527s0175 I 0.729
Cagra.0179s0008 Capsella grandiflora Cagra.0179s0008 I 0.729
Carubv10001962m.g Capsella rubella Carubv10001962m.g I 0.729
SapurV1A.0829s0180 Salix purpurea SapurV1A.0829s0180 I 0.729
Thhalv10014683m.g Eutrema salsugineum Thhalv10014683m.g I 0.729
chr1.CM0195.210.nc Lotus japonicus chr1.CM0195.210.nc I 0.729
chr2.CM0249.370.nd Lotus japonicus chr2.CM0249.370.nd I 0.729
OPUNC09G14150 Oryza punctata OPUNC09G14150 I 0.727
Traes_7BL_7F4124E70 Triticum aestivum Traes_7BL_7F4124E70 I 0.720
gene26118-v1.0-hybrid Fragaria vesca gene26118-v1.0-hybrid I 0.714
AP3 Arabidopsis thaliana AT3G54340 D 0.708
Bo2g020730 Brassica oleracea Bo2g020730 I 0.708
Bo3g014100 Brassica oleracea Bo3g014100 I 0.708
Bo9g152080 Brassica oleracea Bo9g152080 I 0.708
Bra002285 Brassica rapa Bra002285 I 0.708
Bra006549 Brassica rapa Bra006549 I 0.708
Bra020093 Brassica rapa Bra020093 I 0.708
AP3 Arabidopsis lyrata fgenesh2_kg.5__1825__AT3G54340.1 I 0.708
GSMUA_Achr3G02280_001 Musa acuminata GSMUA_Achr3G02280_001 I 0.708
GSMUA_Achr5G01230_001 Musa acuminata GSMUA_Achr5G01230_001 I 0.708
GSMUA_Achr6G18670_001 Musa acuminata GSMUA_Achr6G18670_001 I 0.708
MTR_1g029670 Medicago truncatula MTR_1g029670 I 0.708
PRUPE_ppa026083mg Prunus persica PRUPE_ppa026083mg I 0.708
TCM_000266 Theobroma cacao TCM_000266 I 0.708
VIT_04s0023g02820 Vitis vinifera VIT_04s0023g02820 I 0.708
Cla021117 Citrullus lanatus Cla021117 I 0.708
Pm006266 Prunus mume Pm006266 I 0.708
cassava37821.valid.m1 Manihot esculenta cassava37821.valid.m1 I 0.708
cassava37822.valid.m1 Manihot esculenta cassava37822.valid.m1 I 0.708
cassava41235.m1 Manihot esculenta cassava41235.m1 I 0.708
Cucsa.342790 Cucumis sativus Cucsa.342790 I 0.708
Bostr.0697s0046 Boechera stricta Bostr.0697s0046 I 0.708
Cagra.0562s0025 Capsella grandiflora Cagra.0562s0025 I 0.708
Carubv10018833m.g Capsella rubella Carubv10018833m.g I 0.708
orange1.1g027470m.g Citrus sinensis orange1.1g027470m.g I 0.708
BGIOSGA015023 Oryza indica BGIOSGA015023 I 0.700