CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Eucgr.E01734
(
Eucalyptus grandis
)
MADS box
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00319 (SRF-TF)
IPR002100
Eucgr.E01734
T257948_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
AGL80
M06994_2.00
Arabidopsis thaliana
TCACCA
TGGTGA
Dap-seq
OMalley et al.(2016)
FEM111_col_a
0.761
0.761
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Eucgr.E01734.1
MADS box
10
56
YIANDAARKATFKKRKNGLMKKVSELSTLCGIDACAIVYSSYQAEPE
Links
Other
MADS box
family TFs
Other
Eucalyptus grandis
TFs
59 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
AGL80
Arabidopsis thaliana
AT5G48670
D
0.729
Lus10014883.g
Linum usitatissimum
Lus10014883.g
I
0.739
Ciclev10006519m.g
Citrus clementina
Ciclev10006519m.g
I
0.750
Ciclev10013728m.g
Citrus clementina
Ciclev10013728m.g
I
0.750
Ciclev10024463m.g
Citrus clementina
Ciclev10024463m.g
I
0.739
Eucgr.E01733
Eucalyptus grandis
Eucgr.E01733
I
0.935
Eucgr.E01736
Eucalyptus grandis
Eucgr.E01736
I
0.957
Eucgr.E01737
Eucalyptus grandis
Eucgr.E01737
I
0.935
evm.TU.supercontig_117.19
Carica papaya
evm.TU.supercontig_117.19
I
0.739
gene18029-v1.0-hybrid
Fragaria vesca
gene18029-v1.0-hybrid
I
0.739
gene22916-v1.0-hybrid
Fragaria vesca
gene22916-v1.0-hybrid
I
0.717
gene22967-v1.0-hybrid
Fragaria vesca
gene22967-v1.0-hybrid
I
0.783
gene23924-v1.0-hybrid
Fragaria vesca
gene23924-v1.0-hybrid
I
0.761
Gorai.004G292000
Gossypium raimondii
Gorai.004G292000
I
0.783
Lus10014578.g
Linum usitatissimum
Lus10014578.g
I
0.804
Bostr.2392s0039
Boechera stricta
Bostr.2392s0039
I
0.717
Lus10022316.g
Linum usitatissimum
Lus10022316.g
I
0.761
Lus10032108.g
Linum usitatissimum
Lus10032108.g
I
0.783
MDP0000846004
Malus domestica
MDP0000846004
I
0.739
MDP0000925348
Malus domestica
MDP0000925348
I
0.739
orange1.1g040642m.g
Citrus sinensis
orange1.1g040642m.g
I
0.739
SapurV1A.0066s0310
Salix purpurea
SapurV1A.0066s0310
I
0.804
SapurV1A.0442s0180
Salix purpurea
SapurV1A.0442s0180
I
0.761
SapurV1A.0442s0190
Salix purpurea
SapurV1A.0442s0190
I
0.761
Thhalv10012000m.g
Eutrema salsugineum
Thhalv10012000m.g
I
0.717
Thhalv10022373m.g
Eutrema salsugineum
Thhalv10022373m.g
I
0.717
Thhalv10023873m.g
Eutrema salsugineum
Thhalv10023873m.g
I
0.761
Thhalv10024119m.g
Eutrema salsugineum
Thhalv10024119m.g
I
0.761
chr6.LjT19B22.120.nd
Lotus japonicus
chr6.LjT19B22.120.nd
I
0.717
LjT40B16.70.nc
Lotus japonicus
LjT40B16.70.nc
I
0.761
Solyc01g102260.2
Solanum lycopersicum
Solyc01g102260.2
I
0.783
Bo2g104810
Brassica oleracea
Bo2g104810
I
0.717
Bo9g078450
Brassica oleracea
Bo9g078450
I
0.739
Bra018490
Brassica rapa
Bra018490
I
0.739
Bra029469
Brassica rapa
Bra029469
I
0.739
GLYMA11G33460
Glycine max
GLYMA11G33460
I
0.867
GLYMA18G04760
Glycine max
GLYMA18G04760
I
0.826
MTR_3g065100
Medicago truncatula
MTR_3g065100
I
0.783
POPTR_0005s00420
Populus trichocarpa
POPTR_0005s00420
I
0.783
POPTR_0013s00350
Populus trichocarpa
POPTR_0013s00350
I
0.848
POPTR_0013s01880
Populus trichocarpa
POPTR_0013s01880
I
0.783
PRUPE_ppa018168mg
Prunus persica
PRUPE_ppa018168mg
I
0.756
PRUPE_ppa019749mg
Prunus persica
PRUPE_ppa019749mg
I
0.717
Bostr.2570s0082
Boechera stricta
Bostr.2570s0082
I
0.761
TCM_026842
Theobroma cacao
TCM_026842
I
0.783
VIT_14s0060g00300
Vitis vinifera
VIT_14s0060g00300
I
0.826
Ca_06495
Cicer arietinum
Ca_06495
I
0.739
Ca_13275
Cicer arietinum
Ca_13275
I
0.783
Cla005226
Citrullus lanatus
Cla005226
I
0.822
Pm003257
Prunus mume
Pm003257
I
0.717
Pm004396
Prunus mume
Pm004396
I
0.756
30128.m008984
Ricinus communis
30128.m008984
I
0.708
30199.m000879
Ricinus communis
30199.m000879
I
0.826
cassava15247.m1
Manihot esculenta
cassava15247.m1
I
0.756
cassava19828.m1
Manihot esculenta
cassava19828.m1
I
0.771
Cucsa.050930
Cucumis sativus
Cucsa.050930
I
0.761
Aquca_007_00647
Aquilegia coerulea
Aquca_007_00647
I
0.717
PRUPE_ppa017207mg
Prunus persica
PRUPE_ppa017207mg
N
0.756
GLYMA18G05916
Glycine max
GLYMA18G05916
N
0.711