CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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evm.TU.contig_28448.1
(
Carica papaya
)
MADS box
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00319 (SRF-TF)
IPR002100
evm.TU.contig_28448.1
T258053_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
evm.TU.contig_28448.1
MADS box
10
56
YITNDSARKAMLEKRKKGLIKKVSELSTLCDVKACAIIYSPYDSKQE
Links
Other
MADS box
family TFs
Other
Carica papaya
TFs
76 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
evm.TU.supercontig_185.7
Carica papaya
evm.TU.supercontig_185.7
I
0.762
evm.TU.contig_33457.2
Carica papaya
evm.TU.contig_33457.2
I
0.733
evm.TU.contig_35009
Carica papaya
evm.TU.contig_35009
I
0.818
evm.TU.contig_36181
Carica papaya
evm.TU.contig_36181
I
0.767
evm.TU.contig_37084
Carica papaya
evm.TU.contig_37084
I
0.783
evm.TU.contig_38146
Carica papaya
evm.TU.contig_38146
I
0.727
GSMUA_Achr3G05500_001
Musa acuminata
GSMUA_Achr3G05500_001
I
0.711
evm.TU.contig_43368
Carica papaya
evm.TU.contig_43368
I
0.727
evm.TU.contig_44957
Carica papaya
evm.TU.contig_44957
I
0.711
evm.TU.supercontig_117.18
Carica papaya
evm.TU.supercontig_117.18
I
0.702
evm.TU.supercontig_1237.1
Carica papaya
evm.TU.supercontig_1237.1
I
0.723
evm.TU.supercontig_1750.1
Carica papaya
evm.TU.supercontig_1750.1
I
0.727
evm.TU.supercontig_1750.2
Carica papaya
evm.TU.supercontig_1750.2
I
0.761
evm.TU.supercontig_185.11
Carica papaya
evm.TU.supercontig_185.11
I
0.756
evm.TU.supercontig_185.12
Carica papaya
evm.TU.supercontig_185.12
I
0.702
evm.TU.supercontig_185.2
Carica papaya
evm.TU.supercontig_185.2
I
0.702
evm.TU.contig_40499.2
Carica papaya
evm.TU.contig_40499.2
I
0.778
evm.TU.supercontig_265.1
Carica papaya
evm.TU.supercontig_265.1
I
0.761
evm.TU.supercontig_30.166
Carica papaya
evm.TU.supercontig_30.166
I
0.723
gene18029-v1.0-hybrid
Fragaria vesca
gene18029-v1.0-hybrid
I
0.729
gene22967-v1.0-hybrid
Fragaria vesca
gene22967-v1.0-hybrid
I
0.708
Gorai.004G292000
Gossypium raimondii
Gorai.004G292000
I
0.766
Gorai.013G210200
Gossypium raimondii
Gorai.013G210200
I
0.708
Lus10014578.g
Linum usitatissimum
Lus10014578.g
I
0.702
MDP0000846004
Malus domestica
MDP0000846004
I
0.729
MDP0000925348
Malus domestica
MDP0000925348
I
0.766
SapurV1A.0066s0310
Salix purpurea
SapurV1A.0066s0310
I
0.702
Thhalv10012000m.g
Eutrema salsugineum
Thhalv10012000m.g
I
0.745
LjSGA_018236.1
Lotus japonicus
LjSGA_018236.1
I
0.721
LjSGA_104570.1
Lotus japonicus
LjSGA_104570.1
I
0.793
LjSGA_147985.1
Lotus japonicus
LjSGA_147985.1
I
0.778
evm.TU.contig_31147
Carica papaya
evm.TU.contig_31147
I
0.766
MTR_3g065100
Medicago truncatula
MTR_3g065100
I
0.711
POPTR_0013s01880
Populus trichocarpa
POPTR_0013s01880
I
0.702
PRUPE_ppa018168mg
Prunus persica
PRUPE_ppa018168mg
I
0.778
Solyc01g102260.2
Solanum lycopersicum
Solyc01g102260.2
I
0.702
TCM_026842
Theobroma cacao
TCM_026842
I
0.702
VIT_14s0060g00300
Vitis vinifera
VIT_14s0060g00300
I
0.702
Ca_06495
Cicer arietinum
Ca_06495
I
0.818
Ca_13275
Cicer arietinum
Ca_13275
I
0.711
Pm004396
Prunus mume
Pm004396
I
0.778
30199.m000879
Ricinus communis
30199.m000879
I
0.702
cassava15247.m1
Manihot esculenta
cassava15247.m1
I
0.756
cassava19828.m1
Manihot esculenta
cassava19828.m1
I
0.708
mgf026186m
Mimulus guttatus
mgf026186m
I
0.795
Aquca_027_00068
Aquilegia coerulea
Aquca_027_00068
I
0.711
evm.TU.contig_24608
Carica papaya
evm.TU.contig_24608
I
0.915
evm.TU.contig_25049.1
Carica papaya
evm.TU.contig_25049.1
I
0.711
evm.TU.contig_32899.1
Carica papaya
evm.TU.contig_32899.1
I
0.706
evm.TU.contig_28448.4
Carica papaya
evm.TU.contig_28448.4
I
0.745
evm.TU.contig_28089
Carica papaya
evm.TU.contig_28089
I
0.702
evm.TU.contig_27586
Carica papaya
evm.TU.contig_27586
I
0.727
evm.TU.contig_26058.2
Carica papaya
evm.TU.contig_26058.2
I
0.889
evm.TU.contig_26058.1
Carica papaya
evm.TU.contig_26058.1
I
0.733
evm.TU.contig_25049.5
Carica papaya
evm.TU.contig_25049.5
I
0.723
Pm003258
Prunus mume
Pm003258
N
0.711
evm.TU.contig_24864.1
Carica papaya
evm.TU.contig_24864.1
N
0.739
evm.TU.contig_35762
Carica papaya
evm.TU.contig_35762
N
0.733
Ciclev10013876m.g
Citrus clementina
Ciclev10013876m.g
N
0.711
PRUPE_ppa022799mg
Prunus persica
PRUPE_ppa022799mg
N
0.702
evm.TU.supercontig_1256.1
Carica papaya
evm.TU.supercontig_1256.1
N
0.809
orange1.1g038848m.g
Citrus sinensis
orange1.1g038848m.g
N
0.711
evm.TU.supercontig_185.6
Carica papaya
evm.TU.supercontig_185.6
N
0.769
evm.TU.contig_38760
Carica papaya
evm.TU.contig_38760
N
0.745
evm.TU.contig_25049.2
Carica papaya
evm.TU.contig_25049.2
N
0.911
evm.TU.supercontig_185.8
Carica papaya
evm.TU.supercontig_185.8
N
0.739
evm.TU.supercontig_22.66
Carica papaya
evm.TU.supercontig_22.66
N
0.700
Gorai.004G229700
Gossypium raimondii
Gorai.004G229700
N
0.702
evm.TU.contig_25253.2
Carica papaya
evm.TU.contig_25253.2
N
0.894
evm.TU.supercontig_100.22
Carica papaya
evm.TU.supercontig_100.22
N
0.708
evm.TU.supercontig_358.1
Carica papaya
evm.TU.supercontig_358.1
N
0.957
evm.TU.supercontig_34.40
Carica papaya
evm.TU.supercontig_34.40
N
0.800
evm.TU.supercontig_100.9
Carica papaya
evm.TU.supercontig_100.9
N
0.766
evm.TU.supercontig_30.164
Carica papaya
evm.TU.supercontig_30.164
N
0.745
evm.TU.supercontig_265.6
Carica papaya
evm.TU.supercontig_265.6
N
0.894
evm.TU.supercontig_265.3
Carica papaya
evm.TU.supercontig_265.3
N
0.872