CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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evm.TU.contig_35697
(
Carica papaya
)
MADS box
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00319 (SRF-TF)
IPR002100
evm.TU.contig_35697
T258088_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
evm.TU.contig_35697.1
MADS box
22
49
LQASELSTLCGAEIAIIVFSPGQKVFSF
Links
Other
MADS box
family TFs
Other
Carica papaya
TFs
20 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
evm.TU.contig_33091.2
Carica papaya
evm.TU.contig_33091.2
N
0.893
evm.TU.supercontig_695.5
Carica papaya
evm.TU.supercontig_695.5
N
0.893
Bostr.26833s0197
Boechera stricta
Bostr.26833s0197
N
0.857
Cagra.2519s0016
Capsella grandiflora
Cagra.2519s0016
N
0.857
Carubv10028580m.g
Capsella rubella
Carubv10028580m.g
N
0.857
evm.TU.contig_35157.1
Carica papaya
evm.TU.contig_35157.1
N
0.857
POPTR_0007s03410
Populus trichocarpa
POPTR_0007s03410
N
0.821
PRUPE_ppa026127mg
Prunus persica
PRUPE_ppa026127mg
N
0.821
scaffold_400572.1
Arabidopsis lyrata
scaffold_400572.1
N
0.821
Solyc01g106730.1
Solanum lycopersicum
Solyc01g106730.1
N
0.821
Pm021071
Prunus mume
Pm021071
N
0.821
Bra038225
Brassica rapa
Bra038225
N
0.786
Bra022434
Brassica rapa
Bra022434
N
0.750
VIT_03s0088g00590
Vitis vinifera
VIT_03s0088g00590
N
0.750
Gorai.006G127800
Gossypium raimondii
Gorai.006G127800
N
0.750
LjSGA_067087.1
Lotus japonicus
LjSGA_067087.1
N
0.750
LjT01D09.100.nd
Lotus japonicus
LjT01D09.100.nd
N
0.750
VIT_01s0010g01530
Vitis vinifera
VIT_01s0010g01530
N
0.714
evm.TU.contig_43014
Carica papaya
evm.TU.contig_43014
N
0.714
PGSC0003DMG400045423
Solanum tuberosum
PGSC0003DMG400045423
N
0.700