CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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evm.TU.contig_40189
(
Carica papaya
)
MADS box
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00319 (SRF-TF)
IPR002100
evm.TU.contig_40189
T258124_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
AGL80
M06994_2.00
Arabidopsis thaliana
TCACCA
TGGTGA
Dap-seq
OMalley et al.(2016)
FEM111_col_a
0.708
0.708
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
evm.TU.contig_40189.1
MADS box
10
58
LISNESTRKTTFQKRKKGLMKKASELATLCGINMCMIIYSSYNTQPEVW
Links
Other
MADS box
family TFs
Other
Carica papaya
TFs
10 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
AGL80
Arabidopsis thaliana
AT5G48670
D
0.708
Bostr.2570s0082
Boechera stricta
Bostr.2570s0082
I
0.708
evm.TU.contig_36543
Carica papaya
evm.TU.contig_36543
I
0.958
evm.TU.contig_39415
Carica papaya
evm.TU.contig_39415
I
0.958
evm.TU.supercontig_1153.1
Carica papaya
evm.TU.supercontig_1153.1
N
0.812
evm.TU.supercontig_118.9
Carica papaya
evm.TU.supercontig_118.9
N
0.750
evm.TU.supercontig_51.120
Carica papaya
evm.TU.supercontig_51.120
N
0.917
evm.TU.supercontig_51.124
Carica papaya
evm.TU.supercontig_51.124
N
0.844
POPTR_0013s01880
Populus trichocarpa
POPTR_0013s01880
I
0.708
TCM_025670
Theobroma cacao
TCM_025670
I
0.708