CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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evm.TU.contig_43368
(
Carica papaya
)
MADS box
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00319 (SRF-TF)
IPR002100
evm.TU.contig_43368
T258131_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
AGL80
M06994_2.00
Arabidopsis thaliana
TCACCA
TGGTGA
Dap-seq
OMalley et al.(2016)
FEM111_col_a
0.818
0.818
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
evm.TU.contig_43368.1
MADS box
10
31
YITNDFARKTTFKKRKKGLMKK
Links
Other
MADS box
family TFs
Other
Carica papaya
TFs
72 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
gene22916-v1.0-hybrid
Fragaria vesca
gene22916-v1.0-hybrid
I
0.818
evm.TU.contig_28448.4
Carica papaya
evm.TU.contig_28448.4
I
0.864
evm.TU.contig_31147
Carica papaya
evm.TU.contig_31147
I
0.864
evm.TU.contig_35265
Carica papaya
evm.TU.contig_35265
I
0.727
evm.TU.contig_37084
Carica papaya
evm.TU.contig_37084
I
0.773
evm.TU.contig_38146
Carica papaya
evm.TU.contig_38146
I
0.727
evm.TU.contig_40485
Carica papaya
evm.TU.contig_40485
I
0.818
evm.TU.contig_40499.2
Carica papaya
evm.TU.contig_40499.2
I
0.864
evm.TU.supercontig_117.19
Carica papaya
evm.TU.supercontig_117.19
I
0.773
evm.TU.supercontig_118.30
Carica papaya
evm.TU.supercontig_118.30
I
0.864
evm.TU.supercontig_1237.1
Carica papaya
evm.TU.supercontig_1237.1
I
0.864
evm.TU.supercontig_1750.1
Carica papaya
evm.TU.supercontig_1750.1
I
0.727
evm.TU.supercontig_185.12
Carica papaya
evm.TU.supercontig_185.12
I
0.727
evm.TU.supercontig_185.2
Carica papaya
evm.TU.supercontig_185.2
I
0.864
evm.TU.supercontig_30.166
Carica papaya
evm.TU.supercontig_30.166
I
0.818
AT3G05860
Arabidopsis thaliana
AT3G05860
I
0.727
gene23924-v1.0-hybrid
Fragaria vesca
gene23924-v1.0-hybrid
I
0.818
Gorai.013G168300
Gossypium raimondii
Gorai.013G168300
I
0.818
Gorai.013G210200
Gossypium raimondii
Gorai.013G210200
I
0.750
Lus10014578.g
Linum usitatissimum
Lus10014578.g
I
0.818
Lus10032108.g
Linum usitatissimum
Lus10032108.g
I
0.818
MDP0000152718
Malus domestica
MDP0000152718
I
0.727
MDP0000159587
Malus domestica
MDP0000159587
I
0.727
MDP0000925348
Malus domestica
MDP0000925348
I
0.864
SapurV1A.0066s0310
Salix purpurea
SapurV1A.0066s0310
I
0.909
Thhalv10012000m.g
Eutrema salsugineum
Thhalv10012000m.g
I
0.773
Thhalv10024162m.g
Eutrema salsugineum
Thhalv10024162m.g
I
0.773
chr6.LjT19B22.120.nd
Lotus japonicus
chr6.LjT19B22.120.nd
I
0.773
LjT40B16.70.nc
Lotus japonicus
LjT40B16.70.nc
I
0.864
evm.TU.contig_28089
Carica papaya
evm.TU.contig_28089
I
0.727
Al_scaffold_0003_569
Arabidopsis lyrata
Al_scaffold_0003_569
I
0.818
Bo9g078450
Brassica oleracea
Bo9g078450
I
0.727
Bra029469
Brassica rapa
Bra029469
I
0.727
POPTR_0005s00420
Populus trichocarpa
POPTR_0005s00420
I
0.773
POPTR_0013s01880
Populus trichocarpa
POPTR_0013s01880
I
0.909
Solyc01g102260.2
Solanum lycopersicum
Solyc01g102260.2
I
0.864
TCM_025671
Theobroma cacao
TCM_025671
I
0.773
TCM_026842
Theobroma cacao
TCM_026842
I
0.864
VIT_14s0060g00300
Vitis vinifera
VIT_14s0060g00300
I
0.909
Cla009163
Citrullus lanatus
Cla009163
I
0.864
Cucsa.224270
Cucumis sativus
Cucsa.224270
I
0.818
evm.TU.contig_24608
Carica papaya
evm.TU.contig_24608
I
0.864
Bostr.2392s0039
Boechera stricta
Bostr.2392s0039
I
0.818
Aquca_007_00647
Aquilegia coerulea
Aquca_007_00647
I
0.773
evm.TU.contig_27586
Carica papaya
evm.TU.contig_27586
I
0.818
Eucgr.E01736
Eucalyptus grandis
Eucgr.E01736
I
0.818
Bra039404
Brassica rapa
Bra039404
N
0.727
evm.TU.contig_25253.1
Carica papaya
evm.TU.contig_25253.1
N
0.727
MTR_4g031910
Medicago truncatula
MTR_4g031910
N
0.727
MTR_3g466980
Medicago truncatula
MTR_3g466980
N
0.727
MDP0000236438
Malus domestica
MDP0000236438
N
0.727
MDP0000451827
Malus domestica
MDP0000451827
N
0.773
GSMUA_Achr2G18400_001
Musa acuminata
GSMUA_Achr2G18400_001
N
0.727
Gorai.013G210600
Gossypium raimondii
Gorai.013G210600
N
0.727
evm.TU.contig_35868
Carica papaya
evm.TU.contig_35868
N
0.818
Bo5g145010
Brassica oleracea
Bo5g145010
N
0.727
LjT04G17.30.nc
Lotus japonicus
LjT04G17.30.nc
N
0.727
evm.TU.contig_28448.1
Carica papaya
evm.TU.contig_28448.1
N
0.727
PDK_20s1688321g001
Phoenix dactylifera
PDK_20s1688321g001
N
0.727
Gorai.013G210700
Gossypium raimondii
Gorai.013G210700
N
0.773
PRUPE_ppa022382mg
Prunus persica
PRUPE_ppa022382mg
N
0.727
PRUPE_ppa022799mg
Prunus persica
PRUPE_ppa022799mg
N
0.727
Gorai.004G229700
Gossypium raimondii
Gorai.004G229700
N
0.773
Gorai.004G229600
Gossypium raimondii
Gorai.004G229600
N
0.727
Gorai.004G054700
Gossypium raimondii
Gorai.004G054700
N
0.727
evm.TU.contig_38760
Carica papaya
evm.TU.contig_38760
N
0.864
Carubv10001920m.g
Capsella rubella
Carubv10001920m.g
N
0.727
evm.TU.supercontig_30.164
Carica papaya
evm.TU.supercontig_30.164
N
0.864
evm.TU.supercontig_265.6
Carica papaya
evm.TU.supercontig_265.6
N
0.773
evm.TU.supercontig_100.9
Carica papaya
evm.TU.supercontig_100.9
N
0.727
Pm007730
Prunus mume
Pm007730
N
0.727
evm.TU.supercontig_1256.1
Carica papaya
evm.TU.supercontig_1256.1
N
0.864