CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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evm.TU.supercontig_109.51
(
Carica papaya
)
MADS box
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00319 (SRF-TF)
IPR002100
evm.TU.supercontig_109.51
T258151_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
evm.model.supercontig_109.51
MADS box
15
36
KMNNESNLQVTFFKCQAELFKK
Links
Other
MADS box
family TFs
Other
Carica papaya
TFs
23 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
cassava33542.m1
Manihot esculenta
cassava33542.m1
N
0.727
MDP0000278770
Malus domestica
MDP0000278770
N
0.727
MDP0000233925
Malus domestica
MDP0000233925
N
0.727
evm.TU.supercontig_758.1
Carica papaya
evm.TU.supercontig_758.1
N
0.727
evm.TU.supercontig_695.5
Carica papaya
evm.TU.supercontig_695.5
N
0.818
evm.TU.supercontig_106.19
Carica papaya
evm.TU.supercontig_106.19
N
0.818
evm.TU.supercontig_106.18
Carica papaya
evm.TU.supercontig_106.18
N
0.818
evm.TU.contig_35157.1
Carica papaya
evm.TU.contig_35157.1
N
0.773
evm.TU.contig_28241.1
Carica papaya
evm.TU.contig_28241.1
N
0.773
Carubv10028580m.g
Capsella rubella
Carubv10028580m.g
N
0.727
Cagra.2519s0016
Capsella grandiflora
Cagra.2519s0016
N
0.727
Bostr.26833s0197
Boechera stricta
Bostr.26833s0197
N
0.727
Al_scaffold_0001_74
Arabidopsis lyrata
Al_scaffold_0001_74
N
0.727
Pm021071
Prunus mume
Pm021071
N
0.727
Ca_04662
Cicer arietinum
Ca_04662
N
0.727
Ca_04660
Cicer arietinum
Ca_04660
N
0.727
Ca_04659
Cicer arietinum
Ca_04659
N
0.727
VIT_01s0010g01530
Vitis vinifera
VIT_01s0010g01530
N
0.727
Solyc01g106730.1
Solanum lycopersicum
Solyc01g106730.1
N
0.727
PRUPE_ppa026127mg
Prunus persica
PRUPE_ppa026127mg
N
0.727
MTR_5g055100
Medicago truncatula
MTR_5g055100
N
0.727
AT4G36590
Arabidopsis thaliana
AT4G36590
N
0.727
AGL23
Arabidopsis thaliana
AT1G65360
N
0.727