CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Lus10011787.g
(
Linum usitatissimum
)
MADS box
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00319 (SRF-TF)
IPR002100
Lus10011787.g
T258550_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Lus10011787
MADS box
10
57
MLNDKSCRQVTFSKRRTGLFKKAHELATLCAIQIAIMVFSPGGKPFCF
Links
Other
MADS box
family TFs
Other
Linum usitatissimum
TFs
26 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Lus10040832.g
Linum usitatissimum
Lus10040832.g
N
0.854
29693.m002039
Ricinus communis
29693.m002039
I
0.833
Eucgr.D00311
Eucalyptus grandis
Eucgr.D00311
N
0.812
TCM_029518
Theobroma cacao
TCM_029518
I
0.792
cassava10519.m1
Manihot esculenta
cassava10519.m1
I
0.792
Eucgr.D00313
Eucalyptus grandis
Eucgr.D00313
N
0.792
SapurV1A.0560s0040
Salix purpurea
SapurV1A.0560s0040
N
0.792
SapurV1A.2238s0010
Salix purpurea
SapurV1A.2238s0010
N
0.792
POPTR_0004s13600
Populus trichocarpa
POPTR_0004s13600
N
0.771
Ciclev10017472m.g
Citrus clementina
Ciclev10017472m.g
I
0.771
Eucgr.D00312
Eucalyptus grandis
Eucgr.D00312
N
0.771
orange1.1g037442m.g
Citrus sinensis
orange1.1g037442m.g
I
0.771
PRUPE_ppa024816mg
Prunus persica
PRUPE_ppa024816mg
I
0.750
Pm030655
Prunus mume
Pm030655
I
0.750
Gorai.010G165500
Gossypium raimondii
Gorai.010G165500
I
0.750
Lus10016563.g
Linum usitatissimum
Lus10016563.g
N
0.750
MDP0000274606
Malus domestica
MDP0000274606
N
0.750
gene30567-v1.0-hybrid
Fragaria vesca
gene30567-v1.0-hybrid
I
0.729
AGL29
Arabidopsis thaliana
AT2G34440
I
0.708
AGL29
Arabidopsis lyrata
fgenesh2_kg.4__1464__AT2G34440.1
I
0.708
TCM_006325
Theobroma cacao
TCM_006325
N
0.708
Cla019897
Citrullus lanatus
Cla019897
N
0.708
Cucsa.212320
Cucumis sativus
Cucsa.212320
N
0.708
Bostr.23794s0666
Boechera stricta
Bostr.23794s0666
I
0.708
Cagra.7352s0007
Capsella grandiflora
Cagra.7352s0007
I
0.708
Carubv10025656m.g
Capsella rubella
Carubv10025656m.g
I
0.708