MDP0000146231 (Malus domestica)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 MDP0000146231 T258656_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AGL65
M10901_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AGL65_01 		0.761 0.761
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
MDP0000146231 MADS box 10 55

Links

Other MADS box family TFs
Other Malus domestica TFs

98 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29813.m001508 Ricinus communis 29813.m001508 I 0.891
30138.m004061 Ricinus communis 30138.m004061 I 0.729
AGL94 Arabidopsis lyrata Al_scaffold_0002_1615 N 0.745
AGL30 Arabidopsis lyrata Al_scaffold_0005_228 I 0.826
AMTR_s00010p00264750 Amborella trichopoda AMTR_s00010p00264750 I 0.804
Aquca_002_00641 Aquilegia coerulea Aquca_002_00641 I 0.804
AGL65 Arabidopsis thaliana AT1G18750 D 0.729
AGL94 Arabidopsis thaliana AT1G69540 N 0.739
AGL30 Arabidopsis thaliana AT2G03060 I 0.848
Bo6g109050 Brassica oleracea Bo6g109050 I 0.783
Bo7g080890 Brassica oleracea Bo7g080890 I 0.826
Bo8g068060 Brassica oleracea Bo8g068060 I 0.750
Bo8g104060 Brassica oleracea Bo8g104060 I 0.750
Bo9g072860 Brassica oleracea Bo9g072860 N 0.891
Bostr.0556s0119 Boechera stricta Bostr.0556s0119 I 0.826
Bostr.10273s0411 Boechera stricta Bostr.10273s0411 I 0.826
Bostr.7128s0485 Boechera stricta Bostr.7128s0485 I 0.729
Bra004393 Brassica rapa Bra004393 I 0.783
Bra016544 Brassica rapa Bra016544 I 0.750
Bra017404 Brassica rapa Bra017404 I 0.870
Bra024792 Brassica rapa Bra024792 I 0.826
Bra025685 Brassica rapa Bra025685 I 0.783
Bra031049 Brassica rapa Bra031049 I 0.750
Cagra.0534s0009 Capsella grandiflora Cagra.0534s0009 I 0.826
Cagra.0887s0001 Capsella grandiflora Cagra.0887s0001 I 0.761
Cagra.4153s0004 Capsella grandiflora Cagra.4153s0004 I 0.729
Carubv10009419m.g Capsella rubella Carubv10009419m.g I 0.729
Carubv10017440m.g Capsella rubella Carubv10017440m.g I 0.826
Carubv10020210m.g Capsella rubella Carubv10020210m.g I 0.761
cassava12018.valid.m1 Manihot esculenta cassava12018.valid.m1 I 0.870
cassava17346.m1 Manihot esculenta cassava17346.m1 I 0.891
cassava19791.m1 Manihot esculenta cassava19791.m1 I 0.708
cassava46162.m1 Manihot esculenta cassava46162.m1 I 0.761
Ca_16376 Cicer arietinum Ca_16376 I 0.935
Ca_18082 Cicer arietinum Ca_18082 I 0.957
chr4.CM0087.920.nd Lotus japonicus chr4.CM0087.920.nd I 0.739
Ciclev10020575m.g Citrus clementina Ciclev10020575m.g I 0.708
Ciclev10031963m.g Citrus clementina Ciclev10031963m.g I 0.957
Cla010361 Citrullus lanatus Cla010361 I 0.935
Cla018884 Citrullus lanatus Cla018884 I 0.739
Cucsa.112840 Cucumis sativus Cucsa.112840 I 0.739
Cucsa.284960 Cucumis sativus Cucsa.284960 I 0.891
evm.TU.supercontig_1.45 Carica papaya evm.TU.supercontig_1.45 N 0.891
F775_13266 Aegilops tauschii F775_13266 I 0.739
AGL65 Arabidopsis lyrata fgenesh2_kg.1__2055__AT1G18750.1 I 0.708
GLYMA02G12131 Glycine max GLYMA02G12131 N 0.848
GLYMA07G35610 Glycine max GLYMA07G35610 N 0.913
GLYMA17G10941 Glycine max GLYMA17G10941 I 0.739
GLYMA20G04500 Glycine max GLYMA20G04500 N 0.891
Gorai.001G074200 Gossypium raimondii Gorai.001G074200 I 0.786
Gorai.005G142100 Gossypium raimondii Gorai.005G142100 N 0.848
Gorai.008G194100 Gossypium raimondii Gorai.008G194100 I 0.708
Gorai.013G086600 Gossypium raimondii Gorai.013G086600 N 0.872
GRMZM2G441115 Zea mays GRMZM2G441115 I 0.717
GSMUA_Achr2G01740_001 Musa acuminata GSMUA_Achr2G01740_001 I 0.702
GSMUA_Achr3G24170_001 Musa acuminata GSMUA_Achr3G24170_001 I 0.717
LjSGA_031058.2 Lotus japonicus LjSGA_031058.2 I 0.935
Lus10019089.g Linum usitatissimum Lus10019089.g I 0.729
Lus10026613.g Linum usitatissimum Lus10026613.g I 0.891
Lus10030450.g Linum usitatissimum Lus10030450.g I 0.891
Lus10034464.g Linum usitatissimum Lus10034464.g I 0.717
Lus10036761.g Linum usitatissimum Lus10036761.g N 0.804
Lus10037166.g Linum usitatissimum Lus10037166.g N 0.826
MDP0000146415 Malus domestica MDP0000146415 I 0.978
MDP0000147667 Malus domestica MDP0000147667 I 0.978
MDP0000773068 Malus domestica MDP0000773068 I 0.978
MDP0000919323 Malus domestica MDP0000919323 I 0.978
mgf000945m Mimulus guttatus mgf000945m I 0.708
mgf004425m Mimulus guttatus mgf004425m I 0.708
MLOC_11474 Hordeum vulgare MLOC_11474 I 0.717
MTR_4g108720 Medicago truncatula MTR_4g108720 I 0.739
MTR_5g041650 Medicago truncatula MTR_5g041650 I 0.957
orange1.1g017511m.g Citrus sinensis orange1.1g017511m.g I 0.708
orange1.1g018825m.g Citrus sinensis orange1.1g018825m.g I 0.957
Pavir.Hb00170 Panicum virgatum Pavir.Hb00170 I 0.739
Pavir.J04162 Panicum virgatum Pavir.J04162 I 0.739
PDK_20s1342861g001 Phoenix dactylifera PDK_20s1342861g001 I 0.761
PDK_20s1352301g001 Phoenix dactylifera PDK_20s1352301g001 I 0.809
PK03147.1 Cannabis sativa PK03147.1 I 0.957
PK21701.1 Cannabis sativa PK21701.1 I 0.708
Pm006479 Prunus mume Pm006479 I 0.957
POPTR_0008s08780 Populus trichocarpa POPTR_0008s08780 I 0.957
POPTR_0010s17450 Populus trichocarpa POPTR_0010s17450 N 0.935
AGL33 Populus trichocarpa POPTR_0018s08400 N 0.717
PRUPE_ppa017562mg Prunus persica PRUPE_ppa017562mg I 0.957
SapurV1A.0149s0010 Salix purpurea SapurV1A.0149s0010 N 0.935
SapurV1A.0458s0040 Salix purpurea SapurV1A.0458s0040 I 0.935
Sb05g025970 Sorghum bicolor Sb05g025970 I 0.783
TCM_011687 Theobroma cacao TCM_011687 I 0.913
TCM_014051 Theobroma cacao TCM_014051 I 0.761
Thhalv10004409m.g Eutrema salsugineum Thhalv10004409m.g I 0.826
Thhalv10007954m.g Eutrema salsugineum Thhalv10007954m.g I 0.761
Thhalv10018691m.g Eutrema salsugineum Thhalv10018691m.g I 0.717
Traes_4AL_8DBE120BC Triticum aestivum Traes_4AL_8DBE120BC I 0.739
Traes_4BS_8B4AFA7C2 Triticum aestivum Traes_4BS_8B4AFA7C2 I 0.739
Traes_4DS_4C4EB1D21 Triticum aestivum Traes_4DS_4C4EB1D21 I 0.739
TRIUR3_33223 Triticum urartu TRIUR3_33223 I 0.739
AGL65 Vitis vinifera VIT_17s0000g06340 I 0.729