CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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MDP0000146231
(
Malus domestica
)
MADS box
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00319 (SRF-TF)
IPR002100
MDP0000146231
T258656_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
AGL65
M10901_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AGL65_01
0.761
0.761
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
MDP0000146231
MADS box
10
55
RLENTNGRQATYAKRKNGIMKKANELSILCDIDIILLMFSPTGKPS
Links
Other
MADS box
family TFs
Other
Malus domestica
TFs
98 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
F775_13266
Aegilops tauschii
F775_13266
I
0.739
AMTR_s00010p00264750
Amborella trichopoda
AMTR_s00010p00264750
I
0.804
Aquca_002_00641
Aquilegia coerulea
Aquca_002_00641
I
0.804
AGL30
Arabidopsis lyrata
Al_scaffold_0005_228
I
0.826
AGL94
Arabidopsis lyrata
Al_scaffold_0002_1615
N
0.745
AGL65
Arabidopsis lyrata
fgenesh2_kg.1__2055__AT1G18750.1
I
0.708
AGL65
Arabidopsis thaliana
AT1G18750
D
0.729
AGL94
Arabidopsis thaliana
AT1G69540
N
0.739
AGL30
Arabidopsis thaliana
AT2G03060
I
0.848
Bostr.10273s0411
Boechera stricta
Bostr.10273s0411
I
0.826
Bostr.7128s0485
Boechera stricta
Bostr.7128s0485
I
0.729
Bostr.0556s0119
Boechera stricta
Bostr.0556s0119
I
0.826
Bo6g109050
Brassica oleracea
Bo6g109050
I
0.783
Bo7g080890
Brassica oleracea
Bo7g080890
I
0.826
Bo8g068060
Brassica oleracea
Bo8g068060
I
0.750
Bo8g104060
Brassica oleracea
Bo8g104060
I
0.750
Bo9g072860
Brassica oleracea
Bo9g072860
N
0.891
Bra017404
Brassica rapa
Bra017404
I
0.870
Bra004393
Brassica rapa
Bra004393
I
0.783
Bra031049
Brassica rapa
Bra031049
I
0.750
Bra025685
Brassica rapa
Bra025685
I
0.783
Bra024792
Brassica rapa
Bra024792
I
0.826
Bra016544
Brassica rapa
Bra016544
I
0.750
PK21701.1
Cannabis sativa
PK21701.1
I
0.708
PK03147.1
Cannabis sativa
PK03147.1
I
0.957
Cagra.4153s0004
Capsella grandiflora
Cagra.4153s0004
I
0.729
Cagra.0887s0001
Capsella grandiflora
Cagra.0887s0001
I
0.761
Cagra.0534s0009
Capsella grandiflora
Cagra.0534s0009
I
0.826
Carubv10020210m.g
Capsella rubella
Carubv10020210m.g
I
0.761
Carubv10009419m.g
Capsella rubella
Carubv10009419m.g
I
0.729
Carubv10017440m.g
Capsella rubella
Carubv10017440m.g
I
0.826
evm.TU.supercontig_1.45
Carica papaya
evm.TU.supercontig_1.45
N
0.891
Ca_18082
Cicer arietinum
Ca_18082
I
0.957
Ca_16376
Cicer arietinum
Ca_16376
I
0.935
Cla018884
Citrullus lanatus
Cla018884
I
0.739
Cla010361
Citrullus lanatus
Cla010361
I
0.935
Ciclev10031963m.g
Citrus clementina
Ciclev10031963m.g
I
0.957
Ciclev10020575m.g
Citrus clementina
Ciclev10020575m.g
I
0.708
orange1.1g017511m.g
Citrus sinensis
orange1.1g017511m.g
I
0.708
orange1.1g018825m.g
Citrus sinensis
orange1.1g018825m.g
I
0.957
Cucsa.284960
Cucumis sativus
Cucsa.284960
I
0.891
Cucsa.112840
Cucumis sativus
Cucsa.112840
I
0.739
Thhalv10004409m.g
Eutrema salsugineum
Thhalv10004409m.g
I
0.826
Thhalv10007954m.g
Eutrema salsugineum
Thhalv10007954m.g
I
0.761
Thhalv10018691m.g
Eutrema salsugineum
Thhalv10018691m.g
I
0.717
GLYMA20G04500
Glycine max
GLYMA20G04500
N
0.891
GLYMA17G10941
Glycine max
GLYMA17G10941
I
0.739
GLYMA07G35610
Glycine max
GLYMA07G35610
N
0.913
GLYMA02G12131
Glycine max
GLYMA02G12131
N
0.848
Gorai.013G086600
Gossypium raimondii
Gorai.013G086600
N
0.872
Gorai.008G194100
Gossypium raimondii
Gorai.008G194100
I
0.708
Gorai.005G142100
Gossypium raimondii
Gorai.005G142100
N
0.848
Gorai.001G074200
Gossypium raimondii
Gorai.001G074200
I
0.786
MLOC_11474
Hordeum vulgare
MLOC_11474
I
0.717
Lus10034464.g
Linum usitatissimum
Lus10034464.g
I
0.717
Lus10019089.g
Linum usitatissimum
Lus10019089.g
I
0.729
Lus10026613.g
Linum usitatissimum
Lus10026613.g
I
0.891
Lus10037166.g
Linum usitatissimum
Lus10037166.g
N
0.826
Lus10030450.g
Linum usitatissimum
Lus10030450.g
I
0.891
Lus10036761.g
Linum usitatissimum
Lus10036761.g
N
0.804
chr4.CM0087.920.nd
Lotus japonicus
chr4.CM0087.920.nd
I
0.739
LjSGA_031058.2
Lotus japonicus
LjSGA_031058.2
I
0.935
MDP0000919323
Malus domestica
MDP0000919323
I
0.978
MDP0000773068
Malus domestica
MDP0000773068
I
0.978
MDP0000147667
Malus domestica
MDP0000147667
I
0.978
MDP0000146415
Malus domestica
MDP0000146415
I
0.978
cassava17346.m1
Manihot esculenta
cassava17346.m1
I
0.891
cassava46162.m1
Manihot esculenta
cassava46162.m1
I
0.761
cassava19791.m1
Manihot esculenta
cassava19791.m1
I
0.708
cassava12018.valid.m1
Manihot esculenta
cassava12018.valid.m1
I
0.870
MTR_4g108720
Medicago truncatula
MTR_4g108720
I
0.739
MTR_5g041650
Medicago truncatula
MTR_5g041650
I
0.957
mgf000945m
Mimulus guttatus
mgf000945m
I
0.708
mgf004425m
Mimulus guttatus
mgf004425m
I
0.708
GSMUA_Achr2G01740_001
Musa acuminata
GSMUA_Achr2G01740_001
I
0.702
GSMUA_Achr3G24170_001
Musa acuminata
GSMUA_Achr3G24170_001
I
0.717
Pavir.J04162
Panicum virgatum
Pavir.J04162
I
0.739
Pavir.Hb00170
Panicum virgatum
Pavir.Hb00170
I
0.739
PDK_20s1352301g001
Phoenix dactylifera
PDK_20s1352301g001
I
0.809
PDK_20s1342861g001
Phoenix dactylifera
PDK_20s1342861g001
I
0.761
AGL33
Populus trichocarpa
POPTR_0018s08400
N
0.717
POPTR_0008s08780
Populus trichocarpa
POPTR_0008s08780
I
0.957
POPTR_0010s17450
Populus trichocarpa
POPTR_0010s17450
N
0.935
Pm006479
Prunus mume
Pm006479
I
0.957
PRUPE_ppa017562mg
Prunus persica
PRUPE_ppa017562mg
I
0.957
30138.m004061
Ricinus communis
30138.m004061
I
0.729
29813.m001508
Ricinus communis
29813.m001508
I
0.891
SapurV1A.0149s0010
Salix purpurea
SapurV1A.0149s0010
N
0.935
SapurV1A.0458s0040
Salix purpurea
SapurV1A.0458s0040
I
0.935
Sb05g025970
Sorghum bicolor
Sb05g025970
I
0.783
TCM_011687
Theobroma cacao
TCM_011687
I
0.913
TCM_014051
Theobroma cacao
TCM_014051
I
0.761
Traes_4BS_8B4AFA7C2
Triticum aestivum
Traes_4BS_8B4AFA7C2
I
0.739
Traes_4AL_8DBE120BC
Triticum aestivum
Traes_4AL_8DBE120BC
I
0.739
Traes_4DS_4C4EB1D21
Triticum aestivum
Traes_4DS_4C4EB1D21
I
0.739
TRIUR3_33223
Triticum urartu
TRIUR3_33223
I
0.739
AGL65
Vitis vinifera
VIT_17s0000g06340
I
0.729
GRMZM2G441115
Zea mays
GRMZM2G441115
I
0.717