CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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MDP0000773068
(
Malus domestica
)
MADS box
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00319 (SRF-TF)
IPR002100
MDP0000773068
T258775_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
AGL65
M10901_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AGL65_01
0.778
0.778
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
MDP0000773068
MADS box
11
55
LENTNGRQATYAKRKNGIMKKANELSILCDIDIVLLMFSPTGKPS
Links
Other
MADS box
family TFs
Other
Malus domestica
TFs
97 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
MDP0000146415
Malus domestica
MDP0000146415
I
1.000
MDP0000147667
Malus domestica
MDP0000147667
I
1.000
MDP0000919323
Malus domestica
MDP0000919323
I
1.000
PRUPE_ppa017562mg
Prunus persica
PRUPE_ppa017562mg
I
0.978
Pm006479
Prunus mume
Pm006479
I
0.978
MDP0000146231
Malus domestica
MDP0000146231
I
0.978
POPTR_0008s08780
Populus trichocarpa
POPTR_0008s08780
I
0.956
Ciclev10031963m.g
Citrus clementina
Ciclev10031963m.g
I
0.956
orange1.1g018825m.g
Citrus sinensis
orange1.1g018825m.g
I
0.956
SapurV1A.0458s0040
Salix purpurea
SapurV1A.0458s0040
I
0.956
PK03147.1
Cannabis sativa
PK03147.1
I
0.956
MTR_5g041650
Medicago truncatula
MTR_5g041650
I
0.933
POPTR_0010s17450
Populus trichocarpa
POPTR_0010s17450
N
0.933
Ca_18082
Cicer arietinum
Ca_18082
I
0.933
Ca_16376
Cicer arietinum
Ca_16376
I
0.913
SapurV1A.0149s0010
Salix purpurea
SapurV1A.0149s0010
N
0.913
Cla010361
Citrullus lanatus
Cla010361
I
0.911
evm.TU.supercontig_1.45
Carica papaya
evm.TU.supercontig_1.45
N
0.911
TCM_011687
Theobroma cacao
TCM_011687
I
0.891
LjSGA_031058.2
Lotus japonicus
LjSGA_031058.2
I
0.891
Bo9g072860
Brassica oleracea
Bo9g072860
N
0.889
cassava17346.m1
Manihot esculenta
cassava17346.m1
I
0.889
Gorai.005G142100
Gossypium raimondii
Gorai.005G142100
N
0.889
Lus10026613.g
Linum usitatissimum
Lus10026613.g
I
0.889
Lus10030450.g
Linum usitatissimum
Lus10030450.g
I
0.889
AGL30
Arabidopsis thaliana
AT2G03060
I
0.870
GLYMA07G35610
Glycine max
GLYMA07G35610
N
0.870
29813.m001508
Ricinus communis
29813.m001508
I
0.870
AGL30
Arabidopsis lyrata
Al_scaffold_0005_228
I
0.867
Bo7g080890
Brassica oleracea
Bo7g080890
I
0.867
Bra024792
Brassica rapa
Bra024792
I
0.867
cassava12018.valid.m1
Manihot esculenta
cassava12018.valid.m1
I
0.867
Bostr.0556s0119
Boechera stricta
Bostr.0556s0119
I
0.867
Cagra.0534s0009
Capsella grandiflora
Cagra.0534s0009
I
0.867
Carubv10017440m.g
Capsella rubella
Carubv10017440m.g
I
0.867
Gorai.013G086600
Gossypium raimondii
Gorai.013G086600
N
0.851
Bra017404
Brassica rapa
Bra017404
I
0.848
GLYMA20G04500
Glycine max
GLYMA20G04500
N
0.848
Cucsa.284960
Cucumis sativus
Cucsa.284960
I
0.848
Bostr.10273s0411
Boechera stricta
Bostr.10273s0411
I
0.848
Thhalv10004409m.g
Eutrema salsugineum
Thhalv10004409m.g
I
0.848
AMTR_s00010p00264750
Amborella trichopoda
AMTR_s00010p00264750
I
0.822
GLYMA02G12131
Glycine max
GLYMA02G12131
N
0.822
Lus10037166.g
Linum usitatissimum
Lus10037166.g
N
0.822
Bo6g109050
Brassica oleracea
Bo6g109050
I
0.804
Bra004393
Brassica rapa
Bra004393
I
0.804
AGL94
Arabidopsis lyrata
Al_scaffold_0002_1615
N
0.800
Bo8g068060
Brassica oleracea
Bo8g068060
I
0.800
Bo8g104060
Brassica oleracea
Bo8g104060
I
0.800
Bra016544
Brassica rapa
Bra016544
I
0.800
Bra031049
Brassica rapa
Bra031049
I
0.800
Aquca_002_00641
Aquilegia coerulea
Aquca_002_00641
I
0.800
Cagra.0887s0001
Capsella grandiflora
Cagra.0887s0001
I
0.800
Carubv10020210m.g
Capsella rubella
Carubv10020210m.g
I
0.783
Lus10036761.g
Linum usitatissimum
Lus10036761.g
N
0.783
AGL94
Arabidopsis thaliana
AT1G69540
N
0.778
Bra025685
Brassica rapa
Bra025685
I
0.778
Cla018884
Citrullus lanatus
Cla018884
I
0.778
Cucsa.112840
Cucumis sativus
Cucsa.112840
I
0.778
Cagra.4153s0004
Capsella grandiflora
Cagra.4153s0004
I
0.778
Carubv10009419m.g
Capsella rubella
Carubv10009419m.g
I
0.778
Thhalv10007954m.g
Eutrema salsugineum
Thhalv10007954m.g
I
0.778
PDK_20s1352301g001
Phoenix dactylifera
PDK_20s1352301g001
I
0.766
AGL65
Arabidopsis lyrata
fgenesh2_kg.1__2055__AT1G18750.1
I
0.756
MTR_4g108720
Medicago truncatula
MTR_4g108720
I
0.756
cassava19791.m1
Manihot esculenta
cassava19791.m1
I
0.756
cassava46162.m1
Manihot esculenta
cassava46162.m1
I
0.756
PDK_20s1342861g001
Phoenix dactylifera
PDK_20s1342861g001
I
0.756
Sb05g025970
Sorghum bicolor
Sb05g025970
I
0.739
Thhalv10018691m.g
Eutrema salsugineum
Thhalv10018691m.g
I
0.739
GLYMA17G10941
Glycine max
GLYMA17G10941
I
0.733
GSMUA_Achr3G24170_001
Musa acuminata
GSMUA_Achr3G24170_001
I
0.733
TCM_014051
Theobroma cacao
TCM_014051
I
0.733
Lus10034464.g
Linum usitatissimum
Lus10034464.g
I
0.733
Pavir.Hb00170
Panicum virgatum
Pavir.Hb00170
I
0.733
Pavir.J04162
Panicum virgatum
Pavir.J04162
I
0.733
Thhalv10019726m.g
Eutrema salsugineum
Thhalv10019726m.g
I
0.733
chr4.CM0087.920.nd
Lotus japonicus
chr4.CM0087.920.nd
I
0.733
AGL65
Arabidopsis thaliana
AT1G18750
D
0.729
30138.m004061
Ricinus communis
30138.m004061
I
0.729
Bostr.7128s0485
Boechera stricta
Bostr.7128s0485
I
0.729
F775_13266
Aegilops tauschii
F775_13266
I
0.717
Traes_4AL_8DBE120BC
Triticum aestivum
Traes_4AL_8DBE120BC
I
0.717
Traes_4BS_8B4AFA7C2
Triticum aestivum
Traes_4BS_8B4AFA7C2
I
0.717
Traes_4DS_4C4EB1D21
Triticum aestivum
Traes_4DS_4C4EB1D21
I
0.717
TRIUR3_33223
Triticum urartu
TRIUR3_33223
I
0.717
GRMZM2G441115
Zea mays
GRMZM2G441115
I
0.711
MLOC_11474
Hordeum vulgare
MLOC_11474
I
0.711
AGL33
Populus trichocarpa
POPTR_0018s08400
N
0.711
PRUPE_ppa015857mg
Prunus persica
PRUPE_ppa015857mg
I
0.711
Pm024895
Prunus mume
Pm024895
I
0.711
gene26028-v1.0-hybrid
Fragaria vesca
gene26028-v1.0-hybrid
I
0.711
MDP0000193129
Malus domestica
MDP0000193129
I
0.711
Ciclev10020575m.g
Citrus clementina
Ciclev10020575m.g
I
0.708
Lus10019089.g
Linum usitatissimum
Lus10019089.g
I
0.708
orange1.1g017511m.g
Citrus sinensis
orange1.1g017511m.g
I
0.708
GSMUA_Achr2G01740_001
Musa acuminata
GSMUA_Achr2G01740_001
I
0.702