CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Pavir.Ga01731
(
Panicum virgatum
)
MADS box
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00319 (SRF-TF)
IPR002100
Pavir.Ga01731
T258912_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
AGL12
M10906_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AGL12_01
0.787
0.787
MADS26
M10974_2.00
Oryza sativa
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS26_01
0.787
0.787
MADS50
M10968_2.00
Oryza sativa
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS50_01
0.723
0.723
MLOC_61901
M10964_2.00
Hordeum vulgare
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$BM8_01
0.702
0.702
Q40882_PETHY
M11003_2.00
Petunia x hybrida
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$FBP11_01
0.702
0.702
Q9FR84_MAIZE
M10981_2.00
Zea mays
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS3_03
0.702
0.702
Q41829_MAIZE
M10977_2.00
Zea mays
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ZAP1_02
0.702
0.702
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Pavir.Ga01731.1.p
MADS box
10
56
RIENPAHRQVTFCKRRMGLLKKAKELSVLCDADIGVIVVSPHGKIYD
Links
Other
MADS box
family TFs
Other
Panicum virgatum
TFs
158 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Si012632m.g
Setaria italica
Si012632m.g
I
0.979
Pavir.Gb01604
Panicum virgatum
Pavir.Gb01604
I
0.979
OLONG_023633
Oryza longistaminata
OLONG_023633
I
0.947
BGIOSGA015021
Oryza indica
BGIOSGA015021
I
0.936
OB04G21020
Oryza brachyantha
OB04G21020
I
0.936
OGLUM04G13520
Oryza glumaepatula
OGLUM04G13520
I
0.936
BGIOSGA015023
Oryza indica
BGIOSGA015023
I
0.933
LPERR04G10680
Leersia perrieri
LPERR04G10680
I
0.917
OBART04G13800
Oryza barthii
OBART04G13800
I
0.917
OGLUM04G13550
Oryza glumaepatula
OGLUM04G13550
I
0.917
OLONG_023630
Oryza longistaminata
OLONG_023630
I
0.917
OMERI04G12400
Oryza meridionalis
OMERI04G12400
I
0.917
ONIVA04G12010
Oryza nivara
ONIVA04G12010
I
0.917
ORUFI04G15040
Oryza rufipogon
ORUFI04G15040
I
0.917
ORUFI04G15060
Oryza rufipogon
ORUFI04G15060
I
0.917
BRADI5G11270
Brachypodium distachyon
BRADI5G11270
I
0.915
GRMZM2G069370
Zea mays
GRMZM2G069370
I
0.915
Sb06g017660
Sorghum bicolor
Sb06g017660
I
0.915
ONIVA04G11980
Oryza nivara
ONIVA04G11980
I
0.900
OBART04G13770
Oryza barthii
OBART04G13770
I
0.896
OMERI04G12420
Oryza meridionalis
OMERI04G12420
I
0.896
F775_05799
Aegilops tauschii
F775_05799
I
0.875
OPUNC04G11660
Oryza punctata
OPUNC04G11660
I
0.875
Traes_2BL_E0978B1BC
Triticum aestivum
Traes_2BL_E0978B1BC
I
0.875
Traes_2DL_71F120931
Triticum aestivum
Traes_2DL_71F120931
I
0.875
TRIUR3_02252
Triticum urartu
TRIUR3_02252
I
0.875
BRADI3G13570
Brachypodium distachyon
BRADI3G13570
I
0.851
Pavir.J09556
Panicum virgatum
Pavir.J09556
I
0.833
AMTR_s00071p00198970
Amborella trichopoda
AMTR_s00071p00198970
I
0.830
F775_26271
Aegilops tauschii
F775_26271
I
0.830
LPERR08G01250
Leersia perrieri
LPERR08G01250
I
0.830
MLOC_53973
Hordeum vulgare
MLOC_53973
I
0.830
OB08G11080
Oryza brachyantha
OB08G11080
I
0.830
OPUNC08G01030
Oryza punctata
OPUNC08G01030
I
0.830
Traes_7AL_67921A952
Triticum aestivum
Traes_7AL_67921A952
I
0.830
Traes_7BL_9BCF391CF
Triticum aestivum
Traes_7BL_9BCF391CF
I
0.830
Traes_7DL_CAF83263E
Triticum aestivum
Traes_7DL_CAF83263E
I
0.830
TRIUR3_13653
Triticum urartu
TRIUR3_13653
I
0.830
cassava6262.valid.m1
Manihot esculenta
cassava6262.valid.m1
I
0.830
Lus10001277.g
Linum usitatissimum
Lus10001277.g
I
0.830
Lus10009472.g
Linum usitatissimum
Lus10009472.g
I
0.830
Eucgr.F02956
Eucalyptus grandis
Eucgr.F02956
I
0.812
GRMZM2G117961
Zea mays
GRMZM2G117961
I
0.809
GSMUA_Achr11G19350_001
Musa acuminata
GSMUA_Achr11G19350_001
I
0.809
Sb07g001250
Sorghum bicolor
Sb07g001250
I
0.809
Si014419m.g
Setaria italica
Si014419m.g
I
0.809
29907.m000663
Ricinus communis
29907.m000663
I
0.809
Pavir.J40795
Panicum virgatum
Pavir.J40795
I
0.809
PK26896.1
Cannabis sativa
PK26896.1
I
0.809
Ciclev10023354m.g
Citrus clementina
Ciclev10023354m.g
I
0.792
Gorai.013G135200
Gossypium raimondii
Gorai.013G135200
I
0.792
OPUNC09G14150
Oryza punctata
OPUNC09G14150
I
0.788
AGL12
Arabidopsis thaliana
AT1G71692
D
0.787
BGIOSGA027872
Oryza indica
BGIOSGA027872
I
0.787
Bo2g073010
Brassica oleracea
Bo2g073010
I
0.787
Bo6g113110
Brassica oleracea
Bo6g113110
I
0.787
Bra007972
Brassica rapa
Bra007972
I
0.787
Bra016128
Brassica rapa
Bra016128
I
0.787
AGL12
Arabidopsis lyrata
fgenesh2_kg.2__1419__AT1G71692.1
I
0.787
GRMZM2G105387
Zea mays
GRMZM2G105387
I
0.787
GSMUA_Achr7G02960_001
Musa acuminata
GSMUA_Achr7G02960_001
I
0.787
OBART08G00930
Oryza barthii
OBART08G00930
I
0.787
OGLUM08G00990
Oryza glumaepatula
OGLUM08G00990
I
0.787
OLONG_011815
Oryza longistaminata
OLONG_011815
I
0.787
ONIVA08G00920
Oryza nivara
ONIVA08G00920
I
0.787
ORGLA08G0003200
Oryza glaberrima
ORGLA08G0003200
I
0.787
ORUFI08G00950
Oryza rufipogon
ORUFI08G00950
I
0.787
MADS26
Oryza sativa
OS08G0112700
D
0.787
POPTR_0013s10190
Populus trichocarpa
POPTR_0013s10190
I
0.787
Aquca_014_00077
Aquilegia coerulea
Aquca_014_00077
I
0.787
Bostr.10273s0193
Boechera stricta
Bostr.10273s0193
I
0.787
Cagra.2418s0012
Capsella grandiflora
Cagra.2418s0012
I
0.787
Carubv10020947m.g
Capsella rubella
Carubv10020947m.g
I
0.787
gene27105-v1.0-hybrid
Fragaria vesca
gene27105-v1.0-hybrid
I
0.787
MDP0000316609
Malus domestica
MDP0000316609
I
0.787
SapurV1A.0675s0070
Salix purpurea
SapurV1A.0675s0070
I
0.787
PDK_20s1302432g001
Phoenix dactylifera
PDK_20s1302432g001
I
0.787
PDK_20s1439001g001
Phoenix dactylifera
PDK_20s1439001g001
I
0.787
GLYMA09G36590
Glycine max
GLYMA09G36590
I
0.771
GLYMA12G00770
Glycine max
GLYMA12G00770
I
0.771
MTR_4g036050
Medicago truncatula
MTR_4g036050
I
0.771
PGSC0003DMG401018787
Solanum tuberosum
PGSC0003DMG401018787
I
0.771
POPTR_0019s10540
Populus trichocarpa
POPTR_0019s10540
I
0.771
Solyc11g032100.1
Solanum lycopersicum
Solyc11g032100.1
I
0.771
TCM_036568
Theobroma cacao
TCM_036568
I
0.771
AGL12
Vitis vinifera
VIT_18s0041g02140
I
0.771
Ca_19954
Cicer arietinum
Ca_19954
I
0.771
Cla012709
Citrullus lanatus
Cla012709
I
0.771
cassava21127.m1
Manihot esculenta
cassava21127.m1
I
0.771
Cucsa.061750
Cucumis sativus
Cucsa.061750
I
0.771
mgf017448m
Mimulus guttatus
mgf017448m
I
0.771
evm.TU.supercontig_21.50
Carica papaya
evm.TU.supercontig_21.50
I
0.771
orange1.1g028961m.g
Citrus sinensis
orange1.1g028961m.g
I
0.771
SapurV1A.0945s0060
Salix purpurea
SapurV1A.0945s0060
I
0.771
SapurV1A.3049s0010
Salix purpurea
SapurV1A.3049s0010
I
0.771
Bo6g094120
Brassica oleracea
Bo6g094120
I
0.766
Bra003919
Brassica rapa
Bra003919
I
0.766
PRUPE_ppa015966mg
Prunus persica
PRUPE_ppa015966mg
I
0.766
Pm004239
Prunus mume
Pm004239
I
0.766
Thhalv10019132m.g
Eutrema salsugineum
Thhalv10019132m.g
I
0.766
Traes_4BL_9A17EA3B7
Triticum aestivum
Traes_4BL_9A17EA3B7
I
0.759
MDP0000192806
Malus domestica
MDP0000192806
I
0.750
MDP0000193953
Malus domestica
MDP0000193953
I
0.750
BRADI4G40357
Brachypodium distachyon
BRADI4G40357
I
0.745
BRADI4G40940
Brachypodium distachyon
BRADI4G40940
I
0.745
Pavir.Ia02902
Panicum virgatum
Pavir.Ia02902
I
0.745
gene26118-v1.0-hybrid
Fragaria vesca
gene26118-v1.0-hybrid
I
0.743
GSMUA_Achr11G21460_001
Musa acuminata
GSMUA_Achr11G21460_001
I
0.729
GSMUA_Achr2G04340_001
Musa acuminata
GSMUA_Achr2G04340_001
I
0.729
Ciclev10005698m.g
Citrus clementina
Ciclev10005698m.g
I
0.729
orange1.1g039982m.g
Citrus sinensis
orange1.1g039982m.g
I
0.729
MDP0000179718
Malus domestica
MDP0000179718
I
0.727
Sb01g030570
Sorghum bicolor
Sb01g030570
I
0.723
Si024640m.g
Setaria italica
Si024640m.g
I
0.723
Pavir.Ca00337
Panicum virgatum
Pavir.Ca00337
I
0.723
BGIOSGA017110
Oryza indica
BGIOSGA017110
I
0.708
GRMZM2G026223
Zea mays
GRMZM2G026223
I
0.708
GSMUA_Achr5G20280_001
Musa acuminata
GSMUA_Achr5G20280_001
I
0.708
LPERR03G01640
Leersia perrieri
LPERR03G01640
I
0.708
OB03G11760
Oryza brachyantha
OB03G11760
I
0.708
OBART03G01800
Oryza barthii
OBART03G01800
I
0.708
OBART04G25610
Oryza barthii
OBART04G25610
I
0.708
OGLUM03G01750
Oryza glumaepatula
OGLUM03G01750
I
0.708
OGLUM04G25090
Oryza glumaepatula
OGLUM04G25090
I
0.708
OLONG_010918
Oryza longistaminata
OLONG_010918
I
0.708
OMERI03G01730
Oryza meridionalis
OMERI03G01730
I
0.708
OMERI04G20840
Oryza meridionalis
OMERI04G20840
I
0.708
ONIVA03G01420
Oryza nivara
ONIVA03G01420
I
0.708
OPUNC03G01630
Oryza punctata
OPUNC03G01630
I
0.708
OPUNC04G22650
Oryza punctata
OPUNC04G22650
I
0.708
ORGLA03G0015400
Oryza glaberrima
ORGLA03G0015400
I
0.708
ORGLA04G0222300
Oryza glaberrima
ORGLA04G0222300
I
0.708
ORUFI03G01510
Oryza rufipogon
ORUFI03G01510
I
0.708
ORUFI04G26810
Oryza rufipogon
ORUFI04G26810
I
0.708
MADS50
Oryza sativa
OS03G0122600
D
0.708
MADS31
Oryza sativa
OS04G0614100
I
0.708
POPTR_0001s29100
Populus trichocarpa
POPTR_0001s29100
I
0.708
POPTR_0002s15310
Populus trichocarpa
POPTR_0002s15310
I
0.708
PRUPE_ppa019906mg
Prunus persica
PRUPE_ppa019906mg
I
0.708
Si038299m.g
Setaria italica
Si038299m.g
I
0.708
Pm024524
Prunus mume
Pm024524
I
0.708
cassava3099.m1
Manihot esculenta
cassava3099.m1
I
0.708
Aquca_013_00471
Aquilegia coerulea
Aquca_013_00471
I
0.708
Aquca_035_00266
Aquilegia coerulea
Aquca_035_00266
I
0.708
Pavir.J22336
Panicum virgatum
Pavir.J22336
I
0.708
SapurV1A.0019s1110
Salix purpurea
SapurV1A.0019s1110
I
0.708
SapurV1A.0024s0570
Salix purpurea
SapurV1A.0024s0570
I
0.708
PK19764.1
Cannabis sativa
PK19764.1
I
0.708
Traes_5BS_A19FD8E34
Triticum aestivum
Traes_5BS_A19FD8E34
I
0.705
BRADI2G25090
Brachypodium distachyon
BRADI2G25090
I
0.702
GSMUA_Achr11G19540_001
Musa acuminata
GSMUA_Achr11G19540_001
I
0.702
GSMUA_Achr1G03630_001
Musa acuminata
GSMUA_Achr1G03630_001
I
0.702
LPERR07G00480
Leersia perrieri
LPERR07G00480
I
0.702
LPERR07G18670
Leersia perrieri
LPERR07G18670
I
0.702
Q40882_PETHY
Petunia x hybrida
Q40882_PETHY
D
0.702
Lus10042918.g
Linum usitatissimum
Lus10042918.g
I
0.702
Pavir.Bb00065
Panicum virgatum
Pavir.Bb00065
I
0.702
Pavir.Ia04538
Panicum virgatum
Pavir.Ia04538
I
0.702