CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Pavir.Ib03850
(
Panicum virgatum
)
MADS box
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00319 (SRF-TF)
IPR002100
Pavir.Ib03850
T258931_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Pavir.Ib03850.1.p
MADS box
10
55
WIANDSTRRATFKKRRKGLMKKASELETLCDVDACVVVYGEGEAQP
Links
Other
MADS box
family TFs
Other
Panicum virgatum
TFs
28 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
GRMZM5G839969
Zea mays
GRMZM5G839969
N
0.933
GRMZM5G853066
Zea mays
GRMZM5G853066
N
0.896
Pavir.J14267
Panicum virgatum
Pavir.J14267
N
0.870
Si019470m.g
Setaria italica
Si019470m.g
N
0.857
GSMUA_Achr3G08500_001
Musa acuminata
GSMUA_Achr3G08500_001
N
0.822
Pavir.Aa01999
Panicum virgatum
Pavir.Aa01999
N
0.783
BGIOSGA003304
Oryza indica
BGIOSGA003304
N
0.771
OBART01G12050
Oryza barthii
OBART01G12050
N
0.771
OGLUM01G13490
Oryza glumaepatula
OGLUM01G13490
N
0.771
OGLUM03G24530
Oryza glumaepatula
OGLUM03G24530
N
0.771
ONIVA01G14280
Oryza nivara
ONIVA01G14280
N
0.771
OPUNC01G11730
Oryza punctata
OPUNC01G11730
N
0.771
ORGLA01G0101700
Oryza glaberrima
ORGLA01G0101700
N
0.771
ORGLA03G0221500
Oryza glaberrima
ORGLA03G0221500
N
0.771
ORUFI01G13020
Oryza rufipogon
ORUFI01G13020
N
0.771
Pavir.J40580
Panicum virgatum
Pavir.J40580
N
0.771
OB01G21750
Oryza brachyantha
OB01G21750
N
0.745
Pavir.Ab01824
Panicum virgatum
Pavir.Ab01824
N
0.739
Aquca_007_00647
Aquilegia coerulea
Aquca_007_00647
I
0.733
GSMUA_Achr2G18400_001
Musa acuminata
GSMUA_Achr2G18400_001
N
0.729
evm.TU.supercontig_1750.1
Carica papaya
evm.TU.supercontig_1750.1
I
0.727
OB03G33030
Oryza brachyantha
OB03G33030
N
0.711
Si004188m.g
Setaria italica
Si004188m.g
N
0.711
TRAES3BF073700150CFD_g
Triticum aestivum
TRAES3BF073700150CFD_g
N
0.711
Aquca_027_00068
Aquilegia coerulea
Aquca_027_00068
I
0.711
Pavir.Eb00487
Panicum virgatum
Pavir.Eb00487
N
0.711
GSMUA_Achr2G18410_001
Musa acuminata
GSMUA_Achr2G18410_001
N
0.710
PDK_20s1688321g001
Phoenix dactylifera
PDK_20s1688321g001
N
0.705