CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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SapurV1A.0458s0040
(
Salix purpurea
)
MADS box
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00319 (SRF-TF)
IPR002100
SapurV1A.0458s0040
T259037_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
AGL65
M10901_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AGL65_01
0.717
0.717
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
SapurV1A.0458s0040.1.p
MADS box
10
55
KLENTNGRQATYAKRKHGIMKKANELSILCDIDILLLMFSPTGKPS
Links
Other
MADS box
family TFs
Other
Salix purpurea
TFs
80 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
29813.m001508
Ricinus communis
29813.m001508
I
0.913
AGL30
Arabidopsis lyrata
Al_scaffold_0005_228
I
0.826
AGL30
Arabidopsis thaliana
AT2G03060
I
0.848
AGL94
Arabidopsis thaliana
AT1G69540
N
0.783
AGL94
Arabidopsis lyrata
Al_scaffold_0002_1615
N
0.787
AMTR_s00010p00264750
Amborella trichopoda
AMTR_s00010p00264750
I
0.826
Aquca_002_00641
Aquilegia coerulea
Aquca_002_00641
I
0.783
Bo6g109050
Brassica oleracea
Bo6g109050
I
0.783
Bo7g080890
Brassica oleracea
Bo7g080890
I
0.826
Bo8g068060
Brassica oleracea
Bo8g068060
I
0.729
Bo8g104060
Brassica oleracea
Bo8g104060
I
0.729
Bo9g072860
Brassica oleracea
Bo9g072860
N
0.870
Bostr.0556s0119
Boechera stricta
Bostr.0556s0119
I
0.870
Bostr.10273s0411
Boechera stricta
Bostr.10273s0411
I
0.870
Bra004393
Brassica rapa
Bra004393
I
0.783
Bra016544
Brassica rapa
Bra016544
I
0.729
Bra017404
Brassica rapa
Bra017404
I
0.848
Bra024792
Brassica rapa
Bra024792
I
0.826
Bra025685
Brassica rapa
Bra025685
I
0.766
Bra031049
Brassica rapa
Bra031049
I
0.729
Cagra.0534s0009
Capsella grandiflora
Cagra.0534s0009
I
0.870
Cagra.0887s0001
Capsella grandiflora
Cagra.0887s0001
I
0.804
Carubv10017440m.g
Capsella rubella
Carubv10017440m.g
I
0.870
Carubv10020210m.g
Capsella rubella
Carubv10020210m.g
I
0.804
cassava12018.valid.m1
Manihot esculenta
cassava12018.valid.m1
I
0.891
cassava17346.m1
Manihot esculenta
cassava17346.m1
I
0.913
Ca_16376
Cicer arietinum
Ca_16376
I
0.913
Ca_18082
Cicer arietinum
Ca_18082
I
0.891
chr4.CM0087.920.nd
Lotus japonicus
chr4.CM0087.920.nd
I
0.723
Ciclev10031963m.g
Citrus clementina
Ciclev10031963m.g
I
0.978
Cla010361
Citrullus lanatus
Cla010361
I
0.870
Cla018884
Citrullus lanatus
Cla018884
I
0.739
Cucsa.112840
Cucumis sativus
Cucsa.112840
I
0.739
Cucsa.284960
Cucumis sativus
Cucsa.284960
I
0.826
evm.TU.supercontig_1.45
Carica papaya
evm.TU.supercontig_1.45
N
0.891
F775_13266
Aegilops tauschii
F775_13266
I
0.739
GLYMA02G12131
Glycine max
GLYMA02G12131
N
0.783
GLYMA07G35610
Glycine max
GLYMA07G35610
N
0.848
GLYMA17G10941
Glycine max
GLYMA17G10941
I
0.739
GLYMA20G04500
Glycine max
GLYMA20G04500
N
0.826
Gorai.001G074200
Gossypium raimondii
Gorai.001G074200
I
0.750
Gorai.005G142100
Gossypium raimondii
Gorai.005G142100
N
0.891
Gorai.013G086600
Gossypium raimondii
Gorai.013G086600
N
0.894
LjSGA_031058.2
Lotus japonicus
LjSGA_031058.2
I
0.870
Lus10019089.g
Linum usitatissimum
Lus10019089.g
I
0.750
Lus10026613.g
Linum usitatissimum
Lus10026613.g
I
0.913
Lus10030450.g
Linum usitatissimum
Lus10030450.g
I
0.913
Lus10034464.g
Linum usitatissimum
Lus10034464.g
I
0.783
Lus10036761.g
Linum usitatissimum
Lus10036761.g
N
0.826
Lus10037166.g
Linum usitatissimum
Lus10037166.g
N
0.848
MDP0000146231
Malus domestica
MDP0000146231
I
0.935
MDP0000146415
Malus domestica
MDP0000146415
I
0.956
MDP0000147667
Malus domestica
MDP0000147667
I
0.935
MDP0000773068
Malus domestica
MDP0000773068
I
0.956
MDP0000919323
Malus domestica
MDP0000919323
I
0.956
MLOC_11474
Hordeum vulgare
MLOC_11474
I
0.717
MTR_4g108720
Medicago truncatula
MTR_4g108720
I
0.783
MTR_5g041650
Medicago truncatula
MTR_5g041650
I
0.891
orange1.1g018825m.g
Citrus sinensis
orange1.1g018825m.g
I
0.978
Pavir.Hb00170
Panicum virgatum
Pavir.Hb00170
I
0.723
Pavir.J04162
Panicum virgatum
Pavir.J04162
I
0.723
PDK_20s1342861g001
Phoenix dactylifera
PDK_20s1342861g001
I
0.761
PDK_20s1352301g001
Phoenix dactylifera
PDK_20s1352301g001
I
0.766
PK03147.1
Cannabis sativa
PK03147.1
I
0.978
Pm006479
Prunus mume
Pm006479
I
0.957
POPTR_0008s08780
Populus trichocarpa
POPTR_0008s08780
I
0.978
POPTR_0010s17450
Populus trichocarpa
POPTR_0010s17450
N
0.957
PRUPE_ppa017562mg
Prunus persica
PRUPE_ppa017562mg
I
0.957
SapurV1A.0149s0010
Salix purpurea
SapurV1A.0149s0010
N
0.957
Sb05g025970
Sorghum bicolor
Sb05g025970
I
0.739
Si028357m.g
Setaria italica
Si028357m.g
N
0.717
TCM_011687
Theobroma cacao
TCM_011687
I
0.935
Thhalv10004409m.g
Eutrema salsugineum
Thhalv10004409m.g
I
0.826
Thhalv10007954m.g
Eutrema salsugineum
Thhalv10007954m.g
I
0.708
Thhalv10018691m.g
Eutrema salsugineum
Thhalv10018691m.g
I
0.761
Thhalv10019726m.g
Eutrema salsugineum
Thhalv10019726m.g
I
0.739
Traes_4AL_8DBE120BC
Triticum aestivum
Traes_4AL_8DBE120BC
I
0.739
Traes_4BS_8B4AFA7C2
Triticum aestivum
Traes_4BS_8B4AFA7C2
I
0.739
Traes_4DS_4C4EB1D21
Triticum aestivum
Traes_4DS_4C4EB1D21
I
0.739
TRIUR3_33223
Triticum urartu
TRIUR3_33223
I
0.739