chr5.LjT25B19.190.nd (Lotus japonicus)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 chr5.LjT25B19.190.nd T259342_2.00 Superfamily (2010-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
chr5.LjT25B19.190.nd MADS box 27 74

Links

Other MADS box family TFs
Other Lotus japonicus TFs

162 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29613.m000367 Ricinus communis 29613.m000367 N 0.771
30099.m001671 Ricinus communis 30099.m001671 N 0.708
30099.m001672 Ricinus communis 30099.m001672 N 0.708
Al_scaffold_0001_74 Arabidopsis lyrata Al_scaffold_0001_74 N 0.729
AGL61 Arabidopsis lyrata Al_scaffold_0004_541 N 0.771
Aquca_015_00242 Aquilegia coerulea Aquca_015_00242 N 0.729
Aquca_015_00243 Aquilegia coerulea Aquca_015_00243 N 0.729
Aquca_040_00096 Aquilegia coerulea Aquca_040_00096 N 0.729
Aquca_041_00050 Aquilegia coerulea Aquca_041_00050 N 0.708
Aquca_054_00126 Aquilegia coerulea Aquca_054_00126 N 0.708
AGL61 Arabidopsis thaliana AT2G24840 N 0.771
AT4G36590 Arabidopsis thaliana AT4G36590 N 0.750
AGL62 Arabidopsis thaliana AT5G60440 I 0.708
Bo1g112460 Brassica oleracea Bo1g112460 N 0.729
Bo4g157220 Brassica oleracea Bo4g157220 N 0.708
Bo4g165540 Brassica oleracea Bo4g165540 N 0.708
Bo5g113750 Brassica oleracea Bo5g113750 N 0.729
Bo8g099550 Brassica oleracea Bo8g099550 N 0.729
Bostr.26833s0197 Boechera stricta Bostr.26833s0197 N 0.729
Bostr.5325s0071 Boechera stricta Bostr.5325s0071 N 0.750
Bostr.7867s1515 Boechera stricta Bostr.7867s1515 N 0.750
Bostr.8705s0016 Boechera stricta Bostr.8705s0016 N 0.771
Bra007829 Brassica rapa Bra007829 N 0.729
Bra022434 Brassica rapa Bra022434 N 0.771
Bra026764 Brassica rapa Bra026764 N 0.771
Bra032057 Brassica rapa Bra032057 N 0.708
Bra038225 Brassica rapa Bra038225 N 0.708
Cagra.1004s0007 Capsella grandiflora Cagra.1004s0007 N 0.771
Cagra.2519s0016 Capsella grandiflora Cagra.2519s0016 N 0.729
Carubv10024914m.g Capsella rubella Carubv10024914m.g N 0.771
Carubv10028580m.g Capsella rubella Carubv10028580m.g N 0.729
cassava21387.m1 Manihot esculenta cassava21387.m1 N 0.729
cassava33542.m1 Manihot esculenta cassava33542.m1 N 0.750
cassava41915.m1 Manihot esculenta cassava41915.m1 N 0.708
cassava8711.m1 Manihot esculenta cassava8711.m1 N 0.729
Ca_04659 Cicer arietinum Ca_04659 N 0.771
Ca_04660 Cicer arietinum Ca_04660 N 0.771
Ca_04661 Cicer arietinum Ca_04661 N 0.771
Ca_04665 Cicer arietinum Ca_04665 N 0.729
Ca_07607 Cicer arietinum Ca_07607 N 0.729
Ca_26354 Cicer arietinum Ca_26354 N 0.729
chr1.CM0088.830.nc Lotus japonicus chr1.CM0088.830.nc N 0.750
chr2.CM0250.170.nc Lotus japonicus chr2.CM0250.170.nc N 0.833
chr2.CM0904.120.nd Lotus japonicus chr2.CM0904.120.nd N 0.708
chr3.CM0279.290.nc Lotus japonicus chr3.CM0279.290.nc N 0.750
chr5.LjT39E05.40.nd Lotus japonicus chr5.LjT39E05.40.nd N 0.771
Ciclev10030142m.g Citrus clementina Ciclev10030142m.g N 0.708
Cla006571 Citrullus lanatus Cla006571 N 0.729
Cucsa.298560 Cucumis sativus Cucsa.298560 N 0.729
Eucgr.H04834 Eucalyptus grandis Eucgr.H04834 N 0.729
evm.TU.contig_26687.3 Carica papaya evm.TU.contig_26687.3 N 0.729
evm.TU.contig_27313 Carica papaya evm.TU.contig_27313 N 0.708
evm.TU.contig_28241.1 Carica papaya evm.TU.contig_28241.1 N 0.729
evm.TU.contig_30005.4 Carica papaya evm.TU.contig_30005.4 N 0.708
evm.TU.contig_30689 Carica papaya evm.TU.contig_30689 N 0.708
evm.TU.contig_30908.1 Carica papaya evm.TU.contig_30908.1 N 0.729
evm.TU.contig_33038 Carica papaya evm.TU.contig_33038 N 0.729
evm.TU.contig_35713 Carica papaya evm.TU.contig_35713 N 0.708
evm.TU.contig_35751 Carica papaya evm.TU.contig_35751 N 0.708
evm.TU.contig_37271 Carica papaya evm.TU.contig_37271 N 0.708
evm.TU.contig_41623 Carica papaya evm.TU.contig_41623 N 0.708
evm.TU.supercontig_106.18 Carica papaya evm.TU.supercontig_106.18 N 0.708
evm.TU.supercontig_106.19 Carica papaya evm.TU.supercontig_106.19 N 0.750
evm.TU.supercontig_1455.2 Carica papaya evm.TU.supercontig_1455.2 N 0.729
evm.TU.supercontig_20.86 Carica papaya evm.TU.supercontig_20.86 N 0.729
evm.TU.supercontig_347.11 Carica papaya evm.TU.supercontig_347.11 N 0.708
evm.TU.supercontig_347.7 Carica papaya evm.TU.supercontig_347.7 N 0.708
evm.TU.supercontig_348.3 Carica papaya evm.TU.supercontig_348.3 N 0.729
evm.TU.supercontig_348.4 Carica papaya evm.TU.supercontig_348.4 N 0.729
evm.TU.supercontig_348.8 Carica papaya evm.TU.supercontig_348.8 N 0.729
evm.TU.supercontig_439.7 Carica papaya evm.TU.supercontig_439.7 N 0.708
evm.TU.supercontig_625.4 Carica papaya evm.TU.supercontig_625.4 N 0.708
evm.TU.supercontig_654.4 Carica papaya evm.TU.supercontig_654.4 N 0.708
evm.TU.supercontig_654.6 Carica papaya evm.TU.supercontig_654.6 N 0.708
evm.TU.supercontig_758.4 Carica papaya evm.TU.supercontig_758.4 N 0.729
AGL62 Arabidopsis lyrata fgenesh1_pg.C_scaffold_8002041 N 0.708
fgenesh1_pm.C_scaffold_7000337 Arabidopsis lyrata fgenesh1_pm.C_scaffold_7000337 N 0.729
gene01788-v1.0-hybrid Fragaria vesca gene01788-v1.0-hybrid I 0.708
gene01789-v1.0-hybrid Fragaria vesca gene01789-v1.0-hybrid N 0.708
GLYMA10G40060 Glycine max GLYMA10G40060 N 0.708
GLYMA10G40080 Glycine max GLYMA10G40080 N 0.729
GLYMA20G27320 Glycine max GLYMA20G27320 N 0.729
GLYMA20G27330 Glycine max GLYMA20G27330 N 0.708
GLYMA20G27341 Glycine max GLYMA20G27341 N 0.708
GLYMA20G27350 Glycine max GLYMA20G27350 N 0.729
Gorai.002G213500 Gossypium raimondii Gorai.002G213500 N 0.771
Gorai.005G263100 Gossypium raimondii Gorai.005G263100 N 0.729
Gorai.006G127800 Gossypium raimondii Gorai.006G127800 N 0.750
Gorai.012G163200 Gossypium raimondii Gorai.012G163200 N 0.729
Gorai.N026300 Gossypium raimondii Gorai.N026300 N 0.729
LjB17L21.50.nd Lotus japonicus LjB17L21.50.nd N 0.708
LjSGA_025167.1 Lotus japonicus LjSGA_025167.1 N 0.771
LjSGA_028458.1.1 Lotus japonicus LjSGA_028458.1.1 N 0.750
LjSGA_042140.1 Lotus japonicus LjSGA_042140.1 N 0.708
LjSGA_079719.1 Lotus japonicus LjSGA_079719.1 N 0.729
Lus10012449.g Linum usitatissimum Lus10012449.g N 0.771
Lus10020511.g Linum usitatissimum Lus10020511.g N 0.750
Lus10030663.g Linum usitatissimum Lus10030663.g N 0.729
Lus10030824.g Linum usitatissimum Lus10030824.g N 0.750
MDP0000168914 Malus domestica MDP0000168914 N 0.729
MDP0000221590 Malus domestica MDP0000221590 N 0.771
MDP0000233925 Malus domestica MDP0000233925 N 0.708
MDP0000278770 Malus domestica MDP0000278770 N 0.708
MDP0000434703 Malus domestica MDP0000434703 I 0.729
mgf018529m Mimulus guttatus mgf018529m N 0.750
mgf024307m Mimulus guttatus mgf024307m N 0.750
MTR_1g012570 Medicago truncatula MTR_1g012570 N 0.750
MTR_1g075600 Medicago truncatula MTR_1g075600 N 0.750
MTR_1g077360 Medicago truncatula MTR_1g077360 N 0.750
MTR_1g105910 Medicago truncatula MTR_1g105910 N 0.708
MTR_1g105920 Medicago truncatula MTR_1g105920 N 0.708
MTR_1g108500 Medicago truncatula MTR_1g108500 N 0.705
MTR_1g108510 Medicago truncatula MTR_1g108510 N 0.750
MTR_1g108580 Medicago truncatula MTR_1g108580 N 0.750
MTR_2g030740 Medicago truncatula MTR_2g030740 N 0.729
MTR_2g085250 Medicago truncatula MTR_2g085250 N 0.771
MTR_2g085280 Medicago truncatula MTR_2g085280 N 0.771
MTR_2g093190 Medicago truncatula MTR_2g093190 N 0.729
MTR_3g030770 Medicago truncatula MTR_3g030770 N 0.750
MTR_3g052870 Medicago truncatula MTR_3g052870 N 0.708
MTR_3g052920 Medicago truncatula MTR_3g052920 N 0.750
MTR_3g067875 Medicago truncatula MTR_3g067875 N 0.729
MTR_3g080940 Medicago truncatula MTR_3g080940 N 0.729
MTR_5g045560 Medicago truncatula MTR_5g045560 N 0.750
MTR_5g053390 Medicago truncatula MTR_5g053390 N 0.771
MTR_5g055100 Medicago truncatula MTR_5g055100 N 0.771
MTR_8g043650 Medicago truncatula MTR_8g043650 N 0.708
orange1.1g039654m.g Citrus sinensis orange1.1g039654m.g N 0.708
PGSC0003DMG400005131 Solanum tuberosum PGSC0003DMG400005131 N 0.729
PGSC0003DMG400036006 Solanum tuberosum PGSC0003DMG400036006 N 0.723
PGSC0003DMG400044387 Solanum tuberosum PGSC0003DMG400044387 N 0.729
Pm002317 Prunus mume Pm002317 N 0.708
Pm021070 Prunus mume Pm021070 N 0.750
Pm021071 Prunus mume Pm021071 N 0.729
Pm030655 Prunus mume Pm030655 I 0.708
POPTR_0008s04110 Populus trichocarpa POPTR_0008s04110 N 0.708
POPTR_0009s08750 Populus trichocarpa POPTR_0009s08750 N 0.708
POPTR_0017s07460 Populus trichocarpa POPTR_0017s07460 N 0.729
PRUPE_ppa017246mg Prunus persica PRUPE_ppa017246mg N 0.750
PRUPE_ppa026127mg Prunus persica PRUPE_ppa026127mg N 0.729
SapurV1A.0019s0690 Salix purpurea SapurV1A.0019s0690 N 0.729
SapurV1A.0019s0700 Salix purpurea SapurV1A.0019s0700 N 0.708
SapurV1A.0808s0160 Salix purpurea SapurV1A.0808s0160 N 0.708
SapurV1A.1313s0050 Salix purpurea SapurV1A.1313s0050 N 0.729
scaffold_400572.1 Arabidopsis lyrata scaffold_400572.1 N 0.750
Solyc01g106710.1 Solanum lycopersicum Solyc01g106710.1 N 0.729
Solyc01g106720.1 Solanum lycopersicum Solyc01g106720.1 N 0.729
TCM_006323 Theobroma cacao TCM_006323 N 0.708
TCM_006325 Theobroma cacao TCM_006325 N 0.729
TCM_040735 Theobroma cacao TCM_040735 N 0.750
Thhalv10000479m.g Eutrema salsugineum Thhalv10000479m.g N 0.771
Thhalv10003338m.g Eutrema salsugineum Thhalv10003338m.g N 0.771
Thhalv10012100m.g Eutrema salsugineum Thhalv10012100m.g I 0.737
Thhalv10017754m.g Eutrema salsugineum Thhalv10017754m.g N 0.729
Thhalv10022102m.g Eutrema salsugineum Thhalv10022102m.g N 0.729
Thhalv10027307m.g Eutrema salsugineum Thhalv10027307m.g N 0.729
VIT_01s0010g01500 Vitis vinifera VIT_01s0010g01500 N 0.708
VIT_01s0010g01530 Vitis vinifera VIT_01s0010g01530 N 0.729
VIT_03s0088g00510 Vitis vinifera VIT_03s0088g00510 N 0.708
VIT_03s0088g00550 Vitis vinifera VIT_03s0088g00550 N 0.729
VIT_03s0088g00590 Vitis vinifera VIT_03s0088g00590 N 0.729
VIT_03s0088g00600 Vitis vinifera VIT_03s0088g00600 N 0.708