CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
chr5.LjT39E05.40.nd
(
Lotus japonicus
)
MADS box
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00319 (SRF-TF)
IPR002100
chr5.LjT39E05.40.nd
T259344_2.00
Superfamily (2010-Oct-26)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
chr5.LjT39E05.40.nd
MADS box
21
68
RITNESHLQVTFSKRRTGLFKKASELCTLCGAELALIVFSPGGKAFSF
Links
Other
MADS box
family TFs
Other
Lotus japonicus
TFs
245 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
MTR_3g052920
Medicago truncatula
MTR_3g052920
N
0.833
MDP0000221590
Malus domestica
MDP0000221590
N
0.833
LjSGA_025167.1
Lotus japonicus
LjSGA_025167.1
N
0.833
AT4G36590
Arabidopsis thaliana
AT4G36590
N
0.812
GLYMA20G27320
Glycine max
GLYMA20G27320
N
0.812
MTR_2g030740
Medicago truncatula
MTR_2g030740
N
0.812
PRUPE_ppa026127mg
Prunus persica
PRUPE_ppa026127mg
N
0.812
Ca_04659
Cicer arietinum
Ca_04659
N
0.812
Ca_04660
Cicer arietinum
Ca_04660
N
0.812
Ca_04665
Cicer arietinum
Ca_04665
N
0.812
Cla006571
Citrullus lanatus
Cla006571
N
0.812
Pm021071
Prunus mume
Pm021071
N
0.812
29613.m000367
Ricinus communis
29613.m000367
N
0.812
Cucsa.298560
Cucumis sativus
Cucsa.298560
N
0.812
Bostr.26833s0197
Boechera stricta
Bostr.26833s0197
N
0.812
Bostr.5325s0071
Boechera stricta
Bostr.5325s0071
N
0.812
Bostr.7867s1515
Boechera stricta
Bostr.7867s1515
N
0.812
Cagra.2519s0016
Capsella grandiflora
Cagra.2519s0016
N
0.812
Carubv10028580m.g
Capsella rubella
Carubv10028580m.g
N
0.812
Ciclev10030142m.g
Citrus clementina
Ciclev10030142m.g
N
0.812
Eucgr.I02506
Eucalyptus grandis
Eucgr.I02506
N
0.812
orange1.1g039654m.g
Citrus sinensis
orange1.1g039654m.g
N
0.812
Thhalv10003426m.g
Eutrema salsugineum
Thhalv10003426m.g
N
0.812
Thhalv10022102m.g
Eutrema salsugineum
Thhalv10022102m.g
N
0.812
Al_scaffold_0001_74
Arabidopsis lyrata
Al_scaffold_0001_74
N
0.792
AGL28
Arabidopsis thaliana
AT1G01530
N
0.792
AGL62
Arabidopsis thaliana
AT5G60440
I
0.792
Bo5g113750
Brassica oleracea
Bo5g113750
N
0.792
AGL62
Arabidopsis lyrata
fgenesh1_pg.C_scaffold_8002041
N
0.792
fgenesh1_pm.C_scaffold_7000337
Arabidopsis lyrata
fgenesh1_pm.C_scaffold_7000337
N
0.792
GLYMA20G27330
Glycine max
GLYMA20G27330
N
0.792
GLYMA20G27341
Glycine max
GLYMA20G27341
N
0.792
MTR_1g012570
Medicago truncatula
MTR_1g012570
N
0.792
MTR_1g075600
Medicago truncatula
MTR_1g075600
N
0.792
MTR_1g077360
Medicago truncatula
MTR_1g077360
N
0.792
MTR_1g105910
Medicago truncatula
MTR_1g105910
N
0.792
MTR_1g105920
Medicago truncatula
MTR_1g105920
N
0.792
MTR_1g108510
Medicago truncatula
MTR_1g108510
N
0.792
MTR_2g093190
Medicago truncatula
MTR_2g093190
N
0.792
MTR_3g030770
Medicago truncatula
MTR_3g030770
N
0.792
MTR_3g052870
Medicago truncatula
MTR_3g052870
N
0.792
MTR_5g045560
Medicago truncatula
MTR_5g045560
N
0.792
MTR_8g043650
Medicago truncatula
MTR_8g043650
N
0.792
POPTR_0017s07460
Populus trichocarpa
POPTR_0017s07460
N
0.792
PRUPE_ppa026089mg
Prunus persica
PRUPE_ppa026089mg
N
0.792
TCM_006323
Theobroma cacao
TCM_006323
N
0.792
VIT_01s0010g01530
Vitis vinifera
VIT_01s0010g01530
N
0.792
VIT_03s0088g00510
Vitis vinifera
VIT_03s0088g00510
N
0.792
VIT_03s0088g00600
Vitis vinifera
VIT_03s0088g00600
N
0.792
Pm021018
Prunus mume
Pm021018
N
0.792
30099.m001672
Ricinus communis
30099.m001672
N
0.792
cassava33542.m1
Manihot esculenta
cassava33542.m1
N
0.792
Bostr.8705s0016
Boechera stricta
Bostr.8705s0016
N
0.792
evm.TU.contig_35713
Carica papaya
evm.TU.contig_35713
N
0.792
evm.TU.contig_35751
Carica papaya
evm.TU.contig_35751
N
0.792
evm.TU.contig_37271
Carica papaya
evm.TU.contig_37271
N
0.792
evm.TU.supercontig_106.18
Carica papaya
evm.TU.supercontig_106.18
N
0.792
evm.TU.supercontig_347.7
Carica papaya
evm.TU.supercontig_347.7
N
0.792
evm.TU.supercontig_625.4
Carica papaya
evm.TU.supercontig_625.4
N
0.792
evm.TU.supercontig_654.6
Carica papaya
evm.TU.supercontig_654.6
N
0.792
gene01789-v1.0-hybrid
Fragaria vesca
gene01789-v1.0-hybrid
N
0.792
Gorai.002G213500
Gossypium raimondii
Gorai.002G213500
N
0.792
Lus10030663.g
Linum usitatissimum
Lus10030663.g
N
0.792
MDP0000434703
Malus domestica
MDP0000434703
I
0.792
SapurV1A.1313s0050
Salix purpurea
SapurV1A.1313s0050
N
0.792
Thhalv10000479m.g
Eutrema salsugineum
Thhalv10000479m.g
N
0.792
Thhalv10003338m.g
Eutrema salsugineum
Thhalv10003338m.g
N
0.792
chr1.CM0088.830.nc
Lotus japonicus
chr1.CM0088.830.nc
N
0.792
chr3.CM0279.290.nc
Lotus japonicus
chr3.CM0279.290.nc
N
0.792
Al_scaffold_0002_1221
Arabidopsis lyrata
Al_scaffold_0002_1221
N
0.771
AGL61
Arabidopsis lyrata
Al_scaffold_0004_541
N
0.771
AGL61
Arabidopsis thaliana
AT2G24840
N
0.771
Bo1g112460
Brassica oleracea
Bo1g112460
N
0.771
Bra038225
Brassica rapa
Bra038225
N
0.771
GLYMA10G40080
Glycine max
GLYMA10G40080
N
0.771
GLYMA20G27350
Glycine max
GLYMA20G27350
N
0.771
MTR_1g105905
Medicago truncatula
MTR_1g105905
N
0.771
MTR_1g108580
Medicago truncatula
MTR_1g108580
N
0.771
MTR_2g085250
Medicago truncatula
MTR_2g085250
N
0.771
MTR_2g085280
Medicago truncatula
MTR_2g085280
N
0.771
MTR_3g080940
Medicago truncatula
MTR_3g080940
N
0.771
MTR_5g055100
Medicago truncatula
MTR_5g055100
N
0.771
POPTR_0007s03430
Populus trichocarpa
POPTR_0007s03430
N
0.771
PRUPE_ppa022494mg
Prunus persica
PRUPE_ppa022494mg
N
0.771
scaffold_302326.1
Arabidopsis lyrata
scaffold_302326.1
I
0.771
scaffold_400572.1
Arabidopsis lyrata
scaffold_400572.1
N
0.771
Solyc01g106730.1
Solanum lycopersicum
Solyc01g106730.1
N
0.771
VIT_03s0088g00590
Vitis vinifera
VIT_03s0088g00590
N
0.771
Ca_04661
Cicer arietinum
Ca_04661
N
0.771
Ca_07607
Cicer arietinum
Ca_07607
N
0.771
Ca_26354
Cicer arietinum
Ca_26354
N
0.771
Pm021017
Prunus mume
Pm021017
N
0.771
mgf018529m
Mimulus guttatus
mgf018529m
N
0.771
mgf024307m
Mimulus guttatus
mgf024307m
N
0.771
Cagra.1004s0007
Capsella grandiflora
Cagra.1004s0007
N
0.771
Carubv10024914m.g
Capsella rubella
Carubv10024914m.g
N
0.771
evm.TU.contig_24748.4
Carica papaya
evm.TU.contig_24748.4
N
0.771
evm.TU.contig_26687.3
Carica papaya
evm.TU.contig_26687.3
N
0.771
evm.TU.contig_28241.1
Carica papaya
evm.TU.contig_28241.1
N
0.771
evm.TU.contig_30005.4
Carica papaya
evm.TU.contig_30005.4
N
0.771
evm.TU.contig_30114.1
Carica papaya
evm.TU.contig_30114.1
N
0.771
evm.TU.contig_30908.1
Carica papaya
evm.TU.contig_30908.1
N
0.771
evm.TU.contig_33038
Carica papaya
evm.TU.contig_33038
N
0.771
evm.TU.supercontig_1455.2
Carica papaya
evm.TU.supercontig_1455.2
N
0.771
evm.TU.supercontig_20.86
Carica papaya
evm.TU.supercontig_20.86
N
0.771
evm.TU.supercontig_347.11
Carica papaya
evm.TU.supercontig_347.11
N
0.771
evm.TU.supercontig_348.4
Carica papaya
evm.TU.supercontig_348.4
N
0.771
evm.TU.supercontig_348.8
Carica papaya
evm.TU.supercontig_348.8
N
0.771
evm.TU.supercontig_439.7
Carica papaya
evm.TU.supercontig_439.7
N
0.771
evm.TU.supercontig_505.2
Carica papaya
evm.TU.supercontig_505.2
N
0.771
evm.TU.supercontig_505.4
Carica papaya
evm.TU.supercontig_505.4
N
0.771
evm.TU.supercontig_654.4
Carica papaya
evm.TU.supercontig_654.4
N
0.771
evm.TU.supercontig_695.1
Carica papaya
evm.TU.supercontig_695.1
N
0.771
evm.TU.supercontig_695.7
Carica papaya
evm.TU.supercontig_695.7
N
0.771
evm.TU.supercontig_758.2
Carica papaya
evm.TU.supercontig_758.2
N
0.771
evm.TU.supercontig_758.4
Carica papaya
evm.TU.supercontig_758.4
N
0.771
Lus10012449.g
Linum usitatissimum
Lus10012449.g
N
0.771
Lus10030824.g
Linum usitatissimum
Lus10030824.g
N
0.771
MDP0000233925
Malus domestica
MDP0000233925
N
0.771
MDP0000278770
Malus domestica
MDP0000278770
N
0.771
SapurV1A.0019s0690
Salix purpurea
SapurV1A.0019s0690
N
0.771
SapurV1A.0808s0160
Salix purpurea
SapurV1A.0808s0160
N
0.771
Thhalv10015908m.g
Eutrema salsugineum
Thhalv10015908m.g
N
0.771
chr2.CM0904.120.nd
Lotus japonicus
chr2.CM0904.120.nd
N
0.771
chr5.LjT25B19.190.nd
Lotus japonicus
chr5.LjT25B19.190.nd
N
0.771
LjSGA_079719.1
Lotus japonicus
LjSGA_079719.1
N
0.771
Thhalv10012100m.g
Eutrema salsugineum
Thhalv10012100m.g
I
0.763
Bo4g157220
Brassica oleracea
Bo4g157220
N
0.750
Bo9g142570
Brassica oleracea
Bo9g142570
N
0.750
Bra002480
Brassica rapa
Bra002480
N
0.750
Bra022434
Brassica rapa
Bra022434
N
0.750
Bra026764
Brassica rapa
Bra026764
N
0.750
Bra032057
Brassica rapa
Bra032057
N
0.750
GLYMA10G40060
Glycine max
GLYMA10G40060
N
0.750
GLYMA10G40070
Glycine max
GLYMA10G40070
N
0.750
GLYMA13G39016
Glycine max
GLYMA13G39016
N
0.750
GSMUA_Achr8G07230_001
Musa acuminata
GSMUA_Achr8G07230_001
I
0.750
MTR_5g053390
Medicago truncatula
MTR_5g053390
N
0.750
PGSC0003DMG400043633
Solanum tuberosum
PGSC0003DMG400043633
N
0.750
PGSC0003DMG400044387
Solanum tuberosum
PGSC0003DMG400044387
N
0.750
POPTR_0008s04110
Populus trichocarpa
POPTR_0008s04110
N
0.750
POPTR_0009s08750
Populus trichocarpa
POPTR_0009s08750
N
0.750
PRUPE_ppa017246mg
Prunus persica
PRUPE_ppa017246mg
N
0.750
Solyc01g106710.1
Solanum lycopersicum
Solyc01g106710.1
N
0.750
TCM_040735
Theobroma cacao
TCM_040735
N
0.750
VIT_01s0010g01500
Vitis vinifera
VIT_01s0010g01500
N
0.750
VIT_03s0088g00550
Vitis vinifera
VIT_03s0088g00550
N
0.750
VIT_03s0088g00610
Vitis vinifera
VIT_03s0088g00610
N
0.750
Ca_04662
Cicer arietinum
Ca_04662
N
0.750
Pm021070
Prunus mume
Pm021070
N
0.750
Pm030655
Prunus mume
Pm030655
I
0.750
30099.m001671
Ricinus communis
30099.m001671
N
0.750
cassava21387.m1
Manihot esculenta
cassava21387.m1
N
0.750
cassava8711.m1
Manihot esculenta
cassava8711.m1
N
0.750
mgf022790m
Mimulus guttatus
mgf022790m
N
0.750
Aquca_040_00096
Aquilegia coerulea
Aquca_040_00096
N
0.750
Aquca_054_00126
Aquilegia coerulea
Aquca_054_00126
N
0.750
Cagra.1695s0023
Capsella grandiflora
Cagra.1695s0023
N
0.750
Carubv10007644m.g
Capsella rubella
Carubv10007644m.g
N
0.750
evm.TU.contig_30689
Carica papaya
evm.TU.contig_30689
N
0.750
evm.TU.contig_41623
Carica papaya
evm.TU.contig_41623
N
0.750
evm.TU.supercontig_106.19
Carica papaya
evm.TU.supercontig_106.19
N
0.750
evm.TU.supercontig_347.8
Carica papaya
evm.TU.supercontig_347.8
N
0.750
evm.TU.supercontig_54.68
Carica papaya
evm.TU.supercontig_54.68
N
0.750
evm.TU.supercontig_695.5
Carica papaya
evm.TU.supercontig_695.5
N
0.750
Gorai.005G263100
Gossypium raimondii
Gorai.005G263100
N
0.750
Lus10020511.g
Linum usitatissimum
Lus10020511.g
N
0.750
SapurV1A.0019s0700
Salix purpurea
SapurV1A.0019s0700
N
0.750
Thhalv10027307m.g
Eutrema salsugineum
Thhalv10027307m.g
N
0.750
LjSGA_042140.1
Lotus japonicus
LjSGA_042140.1
N
0.750
LjSGA_067087.1
Lotus japonicus
LjSGA_067087.1
N
0.750
LjT01D09.100.nd
Lotus japonicus
LjT01D09.100.nd
N
0.750
AGL23
Arabidopsis thaliana
AT1G65360
N
0.729
Bo8g099550
Brassica oleracea
Bo8g099550
N
0.729
Bra007829
Brassica rapa
Bra007829
N
0.729
BRADI1G27900
Brachypodium distachyon
BRADI1G27900
N
0.729
BRADI2G26320
Brachypodium distachyon
BRADI2G26320
N
0.729
GSMUA_Achr5G26530_001
Musa acuminata
GSMUA_Achr5G26530_001
I
0.729
MTR_3g067875
Medicago truncatula
MTR_3g067875
N
0.729
PGSC0003DMG400005131
Solanum tuberosum
PGSC0003DMG400005131
N
0.729
POPTR_0009s08740
Populus trichocarpa
POPTR_0009s08740
N
0.729
PRUPE_ppa024816mg
Prunus persica
PRUPE_ppa024816mg
I
0.729
Solyc01g106720.1
Solanum lycopersicum
Solyc01g106720.1
N
0.729
VIT_07s0005g06590
Vitis vinifera
VIT_07s0005g06590
N
0.729
VIT_10s0003g03970
Vitis vinifera
VIT_10s0003g03970
N
0.729
cassava41915.m1
Manihot esculenta
cassava41915.m1
N
0.729
Aquca_015_00242
Aquilegia coerulea
Aquca_015_00242
N
0.729
Aquca_015_00243
Aquilegia coerulea
Aquca_015_00243
N
0.729
Aquca_041_00050
Aquilegia coerulea
Aquca_041_00050
N
0.729
Cagra.1968s0094
Capsella grandiflora
Cagra.1968s0094
N
0.729
Carubv10010156m.g
Capsella rubella
Carubv10010156m.g
N
0.729
Ciclev10030387m.g
Citrus clementina
Ciclev10030387m.g
N
0.729
Eucgr.G01185
Eucalyptus grandis
Eucgr.G01185
N
0.729
evm.TU.contig_27313
Carica papaya
evm.TU.contig_27313
N
0.729
evm.TU.contig_35157.1
Carica papaya
evm.TU.contig_35157.1
N
0.729
evm.TU.supercontig_106.20
Carica papaya
evm.TU.supercontig_106.20
N
0.729
evm.TU.supercontig_1259.1
Carica papaya
evm.TU.supercontig_1259.1
N
0.729
evm.TU.supercontig_348.3
Carica papaya
evm.TU.supercontig_348.3
N
0.729
evm.TU.supercontig_505.6
Carica papaya
evm.TU.supercontig_505.6
N
0.729
evm.TU.supercontig_758.1
Carica papaya
evm.TU.supercontig_758.1
N
0.729
evm.TU.supercontig_851.1
Carica papaya
evm.TU.supercontig_851.1
N
0.729
Gorai.006G127800
Gossypium raimondii
Gorai.006G127800
N
0.729
MDP0000168914
Malus domestica
MDP0000168914
N
0.729
MDP0000274606
Malus domestica
MDP0000274606
N
0.729
orange1.1g036705m.g
Citrus sinensis
orange1.1g036705m.g
N
0.729
chr1.LjB17A22.60.nc
Lotus japonicus
chr1.LjB17A22.60.nc
N
0.729
chr2.CM0250.170.nc
Lotus japonicus
chr2.CM0250.170.nc
N
0.729
LjSGA_082681.2
Lotus japonicus
LjSGA_082681.2
N
0.729
LjSGA_120826.2
Lotus japonicus
LjSGA_120826.2
N
0.729
F775_04223
Aegilops tauschii
F775_04223
I
0.708
F775_43210
Aegilops tauschii
F775_43210
I
0.708
GLYMA10G10295
Glycine max
GLYMA10G10295
N
0.708
GLYMA11G16105
Glycine max
GLYMA11G16105
I
0.708
MTR_0121s0100
Medicago truncatula
MTR_0121s0100
N
0.708
PGSC0003DMG400036160
Solanum tuberosum
PGSC0003DMG400036160
N
0.708
PGSC0003DMG400041035
Solanum tuberosum
PGSC0003DMG400041035
N
0.708
POPTR_0004s13590
Populus trichocarpa
POPTR_0004s13590
N
0.708
TCM_000878
Theobroma cacao
TCM_000878
N
0.708
TCM_006324
Theobroma cacao
TCM_006324
N
0.708
TCM_029518
Theobroma cacao
TCM_029518
I
0.708
TRAES3BF106100060CFD_g
Triticum aestivum
TRAES3BF106100060CFD_g
I
0.708
Traes_6DL_609A01BD5
Triticum aestivum
Traes_6DL_609A01BD5
I
0.708
VIT_00s0386g00010
Vitis vinifera
VIT_00s0386g00010
N
0.708
Pm002317
Prunus mume
Pm002317
N
0.708
28830.m000229
Ricinus communis
28830.m000229
N
0.708
29838.m001672
Ricinus communis
29838.m001672
N
0.708
Ciclev10013802m.g
Citrus clementina
Ciclev10013802m.g
N
0.708
Eucgr.H04834
Eucalyptus grandis
Eucgr.H04834
N
0.708
evm.TU.contig_24748.5
Carica papaya
evm.TU.contig_24748.5
N
0.708
evm.TU.contig_27553.3
Carica papaya
evm.TU.contig_27553.3
N
0.708
evm.TU.contig_35157.2
Carica papaya
evm.TU.contig_35157.2
N
0.708
evm.TU.contig_37082
Carica papaya
evm.TU.contig_37082
N
0.708
evm.TU.supercontig_347.10
Carica papaya
evm.TU.supercontig_347.10
N
0.708
evm.TU.supercontig_347.2
Carica papaya
evm.TU.supercontig_347.2
N
0.708
evm.TU.supercontig_439.1
Carica papaya
evm.TU.supercontig_439.1
N
0.708
evm.TU.supercontig_505.5
Carica papaya
evm.TU.supercontig_505.5
N
0.708
evm.TU.supercontig_654.5
Carica papaya
evm.TU.supercontig_654.5
N
0.708
gene01788-v1.0-hybrid
Fragaria vesca
gene01788-v1.0-hybrid
I
0.708
gene30567-v1.0-hybrid
Fragaria vesca
gene30567-v1.0-hybrid
I
0.708
Lus10031073.g
Linum usitatissimum
Lus10031073.g
N
0.708
Lus10035456.g
Linum usitatissimum
Lus10035456.g
N
0.708
orange1.1g045481m.g
Citrus sinensis
orange1.1g045481m.g
N
0.708
SapurV1A.1128s0080
Salix purpurea
SapurV1A.1128s0080
N
0.708
LjSGA_074894.2
Lotus japonicus
LjSGA_074894.2
N
0.708
MTR_1g108500
Medicago truncatula
MTR_1g108500
N
0.705