CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Bra039117
(
Brassica rapa
)
MBD
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF01429 (MBD)
IPR001739
Bra039117
T259959_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Bra039117.1-P
MBD
255
371
RRFISERHGVLEDGWHVEFKQPLNDYHLCAVYCAPNGNTFGSIQDVACYLGLAVNDNYSCMDAEIRNGSSLLQEKLHMSKRRKTSRWPNNGFPEQKGSSRNAQRRRFPFCGQTRTTF
Links
Other
MBD
family TFs
Other
Brassica rapa
TFs
9 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Bo5g155130
Brassica oleracea
Bo5g155130
N
0.959
MBD9
Arabidopsis lyrata
scaffold_300074.1
N
0.824
Bostr.1460s0067
Boechera stricta
Bostr.1460s0067
N
0.824
Carubv10012794m.g
Capsella rubella
Carubv10012794m.g
N
0.811
MBD9
Arabidopsis thaliana
AT3G01460
N
0.784
Bo1g158920
Brassica oleracea
Bo1g158920
N
0.784
Thhalv10019872m.g
Eutrema salsugineum
Thhalv10019872m.g
N
0.784
Bra040518
Brassica rapa
Bra040518
N
0.770
Thhalv10022520m.g
Eutrema salsugineum
Thhalv10022520m.g
N
0.757