POPTR_0002s22900 (Populus trichocarpa)
MBD

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF01429 (MBD) IPR001739 POPTR_0002s22900 T260875_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0002s22900.1 MBD 83 156

Links

Other MBD family TFs
Other Populus trichocarpa TFs

32 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
POPTR_0014s13300 Populus trichocarpa POPTR_0014s13300 N 0.959
SapurV1A.0053s0440 Salix purpurea SapurV1A.0053s0440 N 0.959
cassava29544.valid.m1 Manihot esculenta cassava29544.valid.m1 N 0.892
cassava29545.valid.m1 Manihot esculenta cassava29545.valid.m1 N 0.892
29703.m001533 Ricinus communis 29703.m001533 N 0.865
Lus10027980.g Linum usitatissimum Lus10027980.g N 0.865
SapurV1A.0633s0290 Salix purpurea SapurV1A.0633s0290 N 0.865
SapurV1A.0633s0300 Salix purpurea SapurV1A.0633s0300 N 0.865
Lus10008176.g Linum usitatissimum Lus10008176.g N 0.851
evm.TU.supercontig_9.132 Carica papaya evm.TU.supercontig_9.132 N 0.824
Lus10029631.g Linum usitatissimum Lus10029631.g N 0.811
SapurV1A.0135s0370 Salix purpurea SapurV1A.0135s0370 N 0.811
Thhalv10001805m.g Eutrema salsugineum Thhalv10001805m.g N 0.811
Bostr.13158s0305 Boechera stricta Bostr.13158s0305 N 0.797
Lus10042674.g Linum usitatissimum Lus10042674.g N 0.797
Bostr.7867s0060 Boechera stricta Bostr.7867s0060 N 0.770
Cagra.0664s0040 Capsella grandiflora Cagra.0664s0040 N 0.770
Carubv10018085m.g Capsella rubella Carubv10018085m.g N 0.770
Ciclev10022348m.g Citrus clementina Ciclev10022348m.g N 0.770
orange1.1g029175m.g Citrus sinensis orange1.1g029175m.g N 0.770
MBD4 Arabidopsis thaliana AT3G63030 N 0.757
MBD4 Arabidopsis lyrata scaffold_503585.1 N 0.757
MBD1 Arabidopsis lyrata scaffold_702078.1 N 0.757
Eucgr.H01546 Eucalyptus grandis Eucgr.H01546 N 0.757
MBD1 Arabidopsis thaliana AT4G22745 N 0.743
Bo4g098290 Brassica oleracea Bo4g098290 N 0.740
Bra040421 Brassica rapa Bra040421 N 0.740
Thhalv10006277m.g Eutrema salsugineum Thhalv10006277m.g N 0.730
Bo8g098350 Brassica oleracea Bo8g098350 N 0.716
Bra007723 Brassica rapa Bra007723 N 0.716
GLYMA02G16930 Glycine max GLYMA02G16930 N 0.716
GLYMA10G02860 Glycine max GLYMA10G02860 N 0.716