CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Carubv10012794m.g
(
Capsella rubella
)
MBD
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF01429 (MBD)
IPR001739
Carubv10012794m.g
T261463_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Carubv10012794m
MBD
259
375
RHFISERHGVLEDGWRVEFKQPLNSYQLCAVYCAPNGKTFSSIQDVACYLGLAVNGNYSCMDAEIRNESALLQERLHMPKRRKTSRWPNNGFPEQKGSAVSAQLRRFPFNGQTMSSF
Links
Other
MBD
family TFs
Other
Capsella rubella
TFs
10 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
MBD9
Arabidopsis lyrata
scaffold_300074.1
N
0.946
MBD9
Arabidopsis thaliana
AT3G01460
N
0.919
Bostr.1460s0067
Boechera stricta
Bostr.1460s0067
N
0.946
Bo1g158920
Brassica oleracea
Bo1g158920
N
0.838
Bo5g155130
Brassica oleracea
Bo5g155130
N
0.838
Bra039117
Brassica rapa
Bra039117
N
0.811
Bra040518
Brassica rapa
Bra040518
N
0.838
Carubv10008192m.g
Capsella rubella
Carubv10008192m.g
N
0.797
Thhalv10019872m.g
Eutrema salsugineum
Thhalv10019872m.g
N
0.892
Thhalv10022520m.g
Eutrema salsugineum
Thhalv10022520m.g
N
0.865