MYB88 (Arabidopsis thaliana)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 AT2G02820 T266381_2.00 Ensembl (2018-Dec-8) Link out
NCBI Gene Info:
Encodes a putative MYB transcription factor involved in stomata development, loss of FLP activity results in a failure of guard mother cells (GMCs) to adopt the guard cell fate, thus they continue to divide resulting in abnormal stomata consisting of clusters of numerous guard cell-like cells. This phenotype is enhanced in double mutants with MYB88. Its transcript levels change after inducing MUTE expression in a mute background.

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
MYB88
M07042_2.00
Arabidopsis thaliana
NNNHNACGCKCCDHH

DDHGGMGCGTNDNNN
Dap-seq
OMalley et al.(2016)
MYB88_col_a
(Direct) (Direct)
MYB88
M07043_2.00
Arabidopsis thaliana
NNNACGCTCCHNN

NNDGGAGCGTNNN
Dap-seq
OMalley et al.(2016)
MYB88_colamp_a
(Direct) (Direct)
MYB88
M11038_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MYB88_01
(Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
MYB124
M01267_2.00
Arabidopsis thaliana
NNVCGCKCBN

NVGMGCGBNN
PBM
Lambert et al.(2019)
pTH11556
0.824 0.912
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
AT2G02820.1 Myb 31 76
AT2G02820.1 Myb 82 126
AT2G02820.2 Myb 31 76
AT2G02820.2 Myb 82 126
AT2G02820.3 Myb 31 76
AT2G02820.3 Myb 82 126

Links

Other Myb/SANT family TFs
Other Arabidopsis thaliana TFs

Invalid Input OrderBy

76 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action