CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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TRP2
(
Arabidopsis thaliana
)
Myb/SANT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00249 (Myb_DNA-binding)
IPR014778
AT3G46590
T266462_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
TRP2
M07092_2.00
Arabidopsis thaliana
AAACCCTAAACCCTAAACCC
GGGTTTAGGGTTTAGGGTTT
Dap-seq
OMalley et al.(2016)
TRP2_col_a
(Direct)
(Direct)
TRP2
M07093_2.00
Arabidopsis thaliana
AAACCCTAAACCCTAAACCCT
AGGGTTTAGGGTTTAGGGTTT
Dap-seq
OMalley et al.(2016)
TRP2_colamp_a
(Direct)
(Direct)
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
PK21687.1
M01282_2.00
Cannabis sativa
HWAAACCYH
DRGGTTTWD
PBM
Lambert et al.(2019)
pTH11299
0.901
0.979
TRP1
M07148_2.00
Arabidopsis thaliana
AAACCCTAAACCCTAAACCCTAA
TTAGGGTTTAGGGTTTAGGGTTT
Dap-seq
OMalley et al.(2016)
TRP1_col
0.883
0.936
TRP5
M01266_2.00
Arabidopsis thaliana
NHWAAACCYH
DRGGTTTWDN
PBM
Lambert et al.(2019)
pTH9963
0.841
0.936
For this family, TFs with SR scores >
0.661
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
AT3G46590.1
Myb
452
502
RRPFSVTEVEALVQAVEKLGTGRWRDVKVRAFEDADHRTYVDLKDKWKTLV
AT3G46590.2
Myb
453
503
RRPFSVTEVEALVQAVEKLGTGRWRDVKVRAFEDADHRTYVDLKDKWKTLV
AT3G46590.3
Myb
447
497
RRPFSVTEVEALVQAVEKLGTGRWRDVKVRAFEDADHRTYVDLKDKWKTLV
AT3G46590.5
Myb
412
462
RRPFSVTEVEALVQAVEKLGTGRWRDVKVRAFEDADHRTYVDLKDKWKTLV
Links
Other
Myb/SANT
family TFs
Other
Arabidopsis thaliana
TFs
198 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
evm.TU.supercontig_107.3
Carica papaya
evm.TU.supercontig_107.3
N
Cla007104
Citrullus lanatus
Cla007104
N
Ciclev10006586m.g
Citrus clementina
Ciclev10006586m.g
N
Ciclev10006834m.g
Citrus clementina
Ciclev10006834m.g
N
orange1.1g040406m.g
Citrus sinensis
orange1.1g040406m.g
N
orange1.1g043479m.g
Citrus sinensis
orange1.1g043479m.g
N
GLYMA16G32311
Glycine max
GLYMA16G32311
I
MDP0000228719
Malus domestica
MDP0000228719
N
cassava35050.m1
Manihot esculenta
cassava35050.m1
N
PRUPE_ppa026574mg
Prunus persica
PRUPE_ppa026574mg
N
VIT_16s0100g00420
Vitis vinifera
VIT_16s0100g00420
I
VIT_16s0100g00430
Vitis vinifera
VIT_16s0100g00430
N