SRM1 (Arabidopsis thaliana)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 AT5G08520 T266525_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SRM1
M02307_2.00		 Arabidopsis thaliana
NNHNATCNN
NNGATNDNN		 PBM
Weirauch et al.(2014)
pTH7080		 (Direct) (Direct)
SRM1
M07121_2.00		 Arabidopsis thaliana
YCTTATCYWHW
WDWRGATAAGR		 Dap-seq
OMalley et al.(2016)
At5g08520_colamp_a		 (Direct) (Direct)
SRM1
M07122_2.00		 Arabidopsis thaliana
YCTTATCYWHWWH
DWWDWRGATAAGR		 Dap-seq
OMalley et al.(2016)
At5g08520_col_b		 (Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
For this family, TFs with SR scores > 0.661 will likely have a similar motif

Experimental Constructs

Motif ID Domain From To Sequence
M02307_2.00 Myb 119 164

DNA Binding Domains

Protein ID Domain From To Sequence
AT5G08520.1 Myb 119 164

Links

Other Myb/SANT family TFs
Other Arabidopsis thaliana TFs

50 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
fgenesh2_kg.6__825__AT5G08520.1 Arabidopsis lyrata fgenesh2_kg.6__825__AT5G08520.1 I 0.904
Bostr.13129s0103 Boechera stricta Bostr.13129s0103 I 0.896
Thhalv10014203m.g Eutrema salsugineum Thhalv10014203m.g I 0.893
Cagra.1365s0066 Capsella grandiflora Cagra.1365s0066 I 0.853
Carubv10001525m.g Capsella rubella Carubv10001525m.g I 0.853
Bo9g174380 Brassica oleracea Bo9g174380 I 0.846
Bra009346 Brassica rapa Bra009346 I 0.825
Bra028654 Brassica rapa Bra028654 I 0.807
Bo3g004970 Brassica oleracea Bo3g004970 I 0.803
Bo2g009130 Brassica oleracea Bo2g009130 I 0.792
Bostr.10199s0068 Boechera stricta Bostr.10199s0068 I 0.750
30131.m007263 Ricinus communis 30131.m007263 I 0.749
Gorai.005G212900 Gossypium raimondii Gorai.005G212900 I 0.735
Gorai.013G067600 Gossypium raimondii Gorai.013G067600 I 0.735
GLYMA20G01450 Glycine max GLYMA20G01450 I 0.734
SapurV1A.0234s0050 Salix purpurea SapurV1A.0234s0050 I 0.734
Ciclev10032259m.g Citrus clementina Ciclev10032259m.g I 0.733
orange1.1g022439m.g Citrus sinensis orange1.1g022439m.g I 0.733
Eucgr.G02591 Eucalyptus grandis Eucgr.G02591 I 0.731
GLYMA07G28310 Glycine max GLYMA07G28310 I 0.729
GSMUA_Achr9G20620_001 Musa acuminata GSMUA_Achr9G20620_001 I 0.729
PRUPE_ppa009396mg Prunus persica PRUPE_ppa009396mg I 0.728
Gorai.012G135600 Gossypium raimondii Gorai.012G135600 I 0.726
GSMUA_Achr1G17730_001 Musa acuminata GSMUA_Achr1G17730_001 I 0.724
TCM_007672 Theobroma cacao TCM_007672 I 0.724
cassava18614.valid.m1 Manihot esculenta cassava18614.valid.m1 I 0.724
Gorai.008G147400 Gossypium raimondii Gorai.008G147400 I 0.724
GLYMA08G40020 Glycine max GLYMA08G40020 I 0.717
GLYMA18G18140 Glycine max GLYMA18G18140 I 0.717
Cla020348 Citrullus lanatus Cla020348 I 0.716
Thhalv10005383m.g Eutrema salsugineum Thhalv10005383m.g I 0.716
GSMUA_Achr9G23760_001 Musa acuminata GSMUA_Achr9G23760_001 I 0.715
VIT_10s0071g00660 Vitis vinifera VIT_10s0071g00660 I 0.713
Cla009230 Citrullus lanatus Cla009230 I 0.713
Cucsa.013870 Cucumis sativus Cucsa.013870 I 0.713
Aquca_035_00057 Aquilegia coerulea Aquca_035_00057 I 0.708
evm.TU.supercontig_138.5 Carica papaya evm.TU.supercontig_138.5 I 0.708
Cucsa.280970 Cucumis sativus Cucsa.280970 I 0.703
PK13672.1 Cannabis sativa PK13672.1 I 0.691
Pm006046 Prunus mume Pm006046 I 0.690
SapurV1A.0333s0040 Salix purpurea SapurV1A.0333s0040 I 0.681
Carubv10003231m.g Capsella rubella Carubv10003231m.g I 0.678
Ca_19000 Cicer arietinum Ca_19000 I 0.677
Cagra.25796s0001 Capsella grandiflora Cagra.25796s0001 I 0.677
Bo7g097510 Brassica oleracea Bo7g097510 I 0.675
Bra009699 Brassica rapa Bra009699 I 0.675
PGSC0003DMG400025303 Solanum tuberosum PGSC0003DMG400025303 I 0.669
GRMZM2G149958 Zea mays GRMZM2G149958 I 0.661
mgf009460m Mimulus guttatus mgf009460m I 0.661
Lus10013447.g Linum usitatissimum Lus10013447.g I 0.661