CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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TRB2
(
Arabidopsis thaliana
)
Myb/SANT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00249 (Myb_DNA-binding)
IPR014778
AT5G67580
T266586_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
TRB2
M01083_2.00
Arabidopsis thaliana
HRMCCTAR
YTAGGKYD
PBM
Sullivan et al.(2014)
pTH7260
(Direct)
(Direct)
TRB2
M02314_2.00
Arabidopsis thaliana
WRMCCTAR
YTAGGKYW
PBM
Weirauch et al.(2014)
pTH7094
(Direct)
(Direct)
TRB2
M07157_2.00
Arabidopsis thaliana
HHHHHNWWRCCCTAAWHHN
NDDWTTAGGGYWWNDDDDD
Dap-seq
OMalley et al.(2016)
TBP3_col_a
(Direct)
(Direct)
TRB2
M07158_2.00
Arabidopsis thaliana
HVDHHHNWARCCCTAAHYH
DRDTTAGGGYTWNDDDHBD
Dap-seq
OMalley et al.(2016)
TBP3_colamp_a
(Direct)
(Direct)
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
PK06103.1
M02348_2.00
Cannabis sativa
TGCCCTAG
CTAGGGCA
PBM
Weirauch et al.(2014)
pTH9649
0.736
0.870
TRB1
M01070_2.00
Arabidopsis thaliana
WRMCCTAR
YTAGGKYW
PBM
Sullivan et al.(2014)
pTH7117
0.731
0.804
OS01G0708000
M02326_2.00
Oryza sativa
WRMCCTAVNN
NNBTAGGKYW
PBM
Weirauch et al.(2014)
pTH8716
0.665
0.783
For this family, TFs with SR scores >
0.661
will likely have a similar motif
Experimental Constructs
Motif ID
Domain
From
To
Sequence
M01083_2.00
Myb
5
56
KQKWTPEEEAALKAGVLKHGTGKWRTILSDTEFSLILKSRSNVDLKDKWRNI
M02314_2.00
Myb
5
56
KQKWTPEEEAALKAGVLKHGTGKWRTILSDTEFSLILKSRSNVDLKDKWRNI
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
AT5G67580.1
Myb
5
56
KQKWTPEEEAALKAGVLKHGTGKWRTILSDTEFSLILKSRSNVDLKDKWRNI
AT5G67580.2
Myb
5
56
KQKWTPEEEAALKAGVLKHGTGKWRTILSDTEFSLILKSRSNVDLKDKWRNI
Links
Other
Myb/SANT
family TFs
Other
Arabidopsis thaliana
TFs
203 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
TRB1
Arabidopsis thaliana
AT1G49950
D
0.731
OS01G0708000
Oryza sativa
OS01G0708000
D
0.665
PK06103.1
Cannabis sativa
PK06103.1
D
0.736
AMTR_s00007p00193000
Amborella trichopoda
AMTR_s00007p00193000
I
0.704
AMTR_s00036p00166880
Amborella trichopoda
AMTR_s00036p00166880
I
0.715
AT1G17520
Arabidopsis thaliana
AT1G17520
I
0.662
TRB3
Arabidopsis thaliana
AT3G49850
I
0.842
BGIOSGA003871
Oryza indica
BGIOSGA003871
I
0.787
BGIOSGA004300
Oryza indica
BGIOSGA004300
I
0.665
Bo1g081300
Brassica oleracea
Bo1g081300
I
0.847
Bo3g096520
Brassica oleracea
Bo3g096520
I
0.860
Bo5g077530
Brassica oleracea
Bo5g077530
I
0.686
Bo6g018740
Brassica oleracea
Bo6g018740
I
0.731
Bo7g099090
Brassica oleracea
Bo7g099090
I
0.700
Bo9g019040
Brassica oleracea
Bo9g019040
I
0.860
Bra012919
Brassica rapa
Bra012919
I
0.700
Bra018818
Brassica rapa
Bra018818
I
0.731
Bra024438
Brassica rapa
Bra024438
I
0.860
Bra029978
Brassica rapa
Bra029978
I
0.847
Bra036035
Brassica rapa
Bra036035
I
0.664
Bra037837
Brassica rapa
Bra037837
I
0.860
Bra037839
Brassica rapa
Bra037839
I
0.860
Bra039650
Brassica rapa
Bra039650
I
0.686
BRADI2G47820
Brachypodium distachyon
BRADI2G47820
I
0.665
BRADI4G01770
Brachypodium distachyon
BRADI4G01770
I
0.707
TRB2
Arabidopsis lyrata
fgenesh1_pm.C_scaffold_8002157
I
0.909
TRB1
Arabidopsis lyrata
fgenesh2_kg.1__4077__AT1G49950.2
I
0.731
TRB3
Arabidopsis lyrata
fgenesh2_kg.5__1337__AT3G49850.1
I
0.881
GLYMA01G40220
Glycine max
GLYMA01G40220
I
0.736
GLYMA05G22500
Glycine max
GLYMA05G22500
I
0.736
GLYMA09G03390
Glycine max
GLYMA09G03390
I
0.711
GLYMA11G05070
Glycine max
GLYMA11G05070
I
0.736
GLYMA15G14320
Glycine max
GLYMA15G14320
I
0.711
GLYMA17G17370
Glycine max
GLYMA17G17370
I
0.736
GRMZM2G087817
Zea mays
GRMZM2G087817
I
0.693
GRMZM2G108424
Zea mays
GRMZM2G108424
I
0.665
GRMZM2G136887
Zea mays
GRMZM2G136887
I
0.693
GSMUA_Achr2G13040_001
Musa acuminata
GSMUA_Achr2G13040_001
I
0.784
GSMUA_Achr4G08670_001
Musa acuminata
GSMUA_Achr4G08670_001
I
0.674
GSMUA_Achr4G09130_001
Musa acuminata
GSMUA_Achr4G09130_001
I
0.674
GSMUA_Achr6G30000_001
Musa acuminata
GSMUA_Achr6G30000_001
I
0.705
GSMUA_Achr6G31260_001
Musa acuminata
GSMUA_Achr6G31260_001
I
0.711
GSMUA_Achr7G01090_001
Musa acuminata
GSMUA_Achr7G01090_001
I
0.739
GSMUA_Achr8G24960_001
Musa acuminata
GSMUA_Achr8G24960_001
I
0.674
LPERR01G18090
Leersia perrieri
LPERR01G18090
I
0.787
LPERR01G24270
Leersia perrieri
LPERR01G24270
I
0.665
MLOC_10278
Hordeum vulgare
MLOC_10278
I
0.707
MTR_0095s0040
Medicago truncatula
MTR_0095s0040
I
0.719
MTR_1g041765
Medicago truncatula
MTR_1g041765
I
0.729
MTR_2g031870
Medicago truncatula
MTR_2g031870
I
0.711
MTR_4g097130
Medicago truncatula
MTR_4g097130
I
0.736
MTR_5g015340
Medicago truncatula
MTR_5g015340
I
0.697
MTR_8g494240
Medicago truncatula
MTR_8g494240
I
0.739
OB01G30760
Oryza brachyantha
OB01G30760
I
0.822
OB01G37330
Oryza brachyantha
OB01G37330
I
0.665
OBART01G21150
Oryza barthii
OBART01G21150
I
0.787
OBART01G28260
Oryza barthii
OBART01G28260
I
0.665
OGLUM01G32190
Oryza glumaepatula
OGLUM01G32190
I
0.665
OLONG_008666
Oryza longistaminata
OLONG_008666
I
0.665
OLONG_011068
Oryza longistaminata
OLONG_011068
I
0.787
OMERI01G19490
Oryza meridionalis
OMERI01G19490
I
0.787
OMERI01G19510
Oryza meridionalis
OMERI01G19510
I
0.787
OMERI05G07460
Oryza meridionalis
OMERI05G07460
I
0.665
ONIVA01G23780
Oryza nivara
ONIVA01G23780
I
0.787
ONIVA01G32190
Oryza nivara
ONIVA01G32190
I
0.665
OPUNC01G21220
Oryza punctata
OPUNC01G21220
I
0.787
OPUNC01G28080
Oryza punctata
OPUNC01G28080
I
0.665
ORGLA01G0168300
Oryza glaberrima
ORGLA01G0168300
I
0.787
ORGLA01G0233700
Oryza glaberrima
ORGLA01G0233700
I
0.665
ORUFI01G23880
Oryza rufipogon
ORUFI01G23880
I
0.787
ORUFI01G31370
Oryza rufipogon
ORUFI01G31370
I
0.665
OS01G0589300
Oryza sativa
OS01G0589300
I
0.787
OSTLU_27049
Ostreococcus lucimarinus
OSTLU_27049
I
0.695
PGSC0003DMG400023131
Solanum tuberosum
PGSC0003DMG400023131
I
0.707
PGSC0003DMG401025742
Solanum tuberosum
PGSC0003DMG401025742
I
0.795
PGSC0003DMG402003328
Solanum tuberosum
PGSC0003DMG402003328
I
0.727
POPTR_0001s30000
Populus trichocarpa
POPTR_0001s30000
I
0.756
POPTR_0006s14940
Populus trichocarpa
POPTR_0006s14940
I
0.741
POPTR_0007s14920
Populus trichocarpa
POPTR_0007s14920
I
0.825
POPTR_0009s09020
Populus trichocarpa
POPTR_0009s09020
I
0.749
POPTR_0014s01010
Populus trichocarpa
POPTR_0014s01010
I
0.786
POPTR_0018s07040
Populus trichocarpa
POPTR_0018s07040
I
0.720
PRUPE_ppa007796mg
Prunus persica
PRUPE_ppa007796mg
I
0.741
PRUPE_ppa009220mg
Prunus persica
PRUPE_ppa009220mg
I
0.736
PRUPE_ppa011492mg
Prunus persica
PRUPE_ppa011492mg
I
0.761
Sb03g026470
Sorghum bicolor
Sb03g026470
I
0.693
Sb03g032530
Sorghum bicolor
Sb03g032530
I
0.665
scaffold_101953.1
Arabidopsis lyrata
scaffold_101953.1
I
0.662
SELMODRAFT_413266
Selaginella moellendorffii
SELMODRAFT_413266
I
0.719
SELMODRAFT_426759
Selaginella moellendorffii
SELMODRAFT_426759
I
0.719
SELMODRAFT_443975
Selaginella moellendorffii
SELMODRAFT_443975
I
0.752
SELMODRAFT_49312
Selaginella moellendorffii
SELMODRAFT_49312
I
0.752
Si002403m.g
Setaria italica
Si002403m.g
I
0.693
Si002467m.g
Setaria italica
Si002467m.g
I
0.665
Solyc01g106940.2
Solanum lycopersicum
Solyc01g106940.2
I
0.725
Solyc02g064630.2
Solanum lycopersicum
Solyc02g064630.2
I
0.727
Solyc11g044320.1
Solanum lycopersicum
Solyc11g044320.1
I
0.707
TCM_000807
Theobroma cacao
TCM_000807
I
0.845
TCM_007242
Theobroma cacao
TCM_007242
I
0.784
Traes_3AL_12B53AB09
Triticum aestivum
Traes_3AL_12B53AB09
I
0.665
Traes_3AL_CF481F6AC
Triticum aestivum
Traes_3AL_CF481F6AC
I
0.668
TRAES3BF075800120CFD_g
Triticum aestivum
TRAES3BF075800120CFD_g
I
0.665
TRAES3BF118300070CFD_g
Triticum aestivum
TRAES3BF118300070CFD_g
I
0.668
Traes_5AS_8756ECB5A
Triticum aestivum
Traes_5AS_8756ECB5A
I
0.707
Traes_5BS_EB206B8BC
Triticum aestivum
Traes_5BS_EB206B8BC
I
0.707
Traes_5DS_3EE830A43
Triticum aestivum
Traes_5DS_3EE830A43
I
0.707
TRIUR3_08672
Triticum urartu
TRIUR3_08672
I
0.668
TRIUR3_10613
Triticum urartu
TRIUR3_10613
I
0.707
VIT_00s1311g00020
Vitis vinifera
VIT_00s1311g00020
I
0.729
TRB1
Vitis vinifera
VIT_03s0091g01030
I
0.784
VIT_07s0151g00480
Vitis vinifera
VIT_07s0151g00480
I
0.729
VIT_11s0016g01890
Vitis vinifera
VIT_11s0016g01890
I
0.750
Ca_02232
Cicer arietinum
Ca_02232
I
0.736
Ca_08043
Cicer arietinum
Ca_08043
I
0.729
Ca_09355
Cicer arietinum
Ca_09355
I
0.736
Cla006547
Citrullus lanatus
Cla006547
I
0.749
Cla014248
Citrullus lanatus
Cla014248
I
0.736
Pm002374
Prunus mume
Pm002374
I
0.736
Pm021139
Prunus mume
Pm021139
I
0.761
Pm027209
Prunus mume
Pm027209
I
0.741
29661.m000926
Ricinus communis
29661.m000926
I
0.825
29812.m000204
Ricinus communis
29812.m000204
I
0.749
29912.m005376
Ricinus communis
29912.m005376
I
0.761
cassava19326.valid.m1
Manihot esculenta
cassava19326.valid.m1
I
0.749
cassava37744.valid.m1
Manihot esculenta
cassava37744.valid.m1
I
0.860
cassava43824.valid.m1
Manihot esculenta
cassava43824.valid.m1
I
0.736
cassava7508.valid.m1
Manihot esculenta
cassava7508.valid.m1
I
0.825
Cucsa.103240
Cucumis sativus
Cucsa.103240
I
0.736
Cucsa.298390
Cucumis sativus
Cucsa.298390
I
0.749
EuGene.0000030935
Micromonas pusilla
EuGene.0000030935
I
0.662
gw1.1.287.1
Physcomitrella patens
gw1.1.287.1
I
0.705
gw1.176.27.1
Physcomitrella patens
gw1.176.27.1
I
0.705
mgf000125m
Mimulus guttatus
mgf000125m
I
0.705
mgf004823m
Mimulus guttatus
mgf004823m
I
0.667
mgf009594m
Mimulus guttatus
mgf009594m
I
0.744
mgf010975m
Mimulus guttatus
mgf010975m
I
0.705
mgf011386m
Mimulus guttatus
mgf011386m
I
0.732
Aquca_001_00028
Aquilegia coerulea
Aquca_001_00028
I
0.750
Aquca_004_00181
Aquilegia coerulea
Aquca_004_00181
I
0.749
Aquca_060_00026
Aquilegia coerulea
Aquca_060_00026
I
0.667
Bostr.0568s0184
Boechera stricta
Bostr.0568s0184
I
0.899
Bostr.26675s0174
Boechera stricta
Bostr.26675s0174
I
0.731
Bostr.6864s0256
Boechera stricta
Bostr.6864s0256
I
0.881
Cagra.0342s0046
Capsella grandiflora
Cagra.0342s0046
I
0.899
Cagra.2826s0004
Capsella grandiflora
Cagra.2826s0004
I
0.731
Cagra.4491s0006
Capsella grandiflora
Cagra.4491s0006
I
0.881
Carubv10009836m.g
Capsella rubella
Carubv10009836m.g
I
0.731
Carubv10017722m.g
Capsella rubella
Carubv10017722m.g
I
0.881
Carubv10026874m.g
Capsella rubella
Carubv10026874m.g
I
0.899
Ciclev10009173m.g
Citrus clementina
Ciclev10009173m.g
I
0.761
Ciclev10026089m.g
Citrus clementina
Ciclev10026089m.g
I
0.845
Ciclev10028926m.g
Citrus clementina
Ciclev10028926m.g
I
0.749
Eucgr.C00865
Eucalyptus grandis
Eucgr.C00865
I
0.741
Eucgr.H02312
Eucalyptus grandis
Eucgr.H02312
I
0.736
Eucgr.I01053
Eucalyptus grandis
Eucgr.I01053
I
0.749
EuGene.0500010080
Micromonas sp RCC299
EuGene.0500010080
I
0.690
evm.TU.supercontig_25.81
Carica papaya
evm.TU.supercontig_25.81
I
0.705
gene05764-v1.0-hybrid
Fragaria vesca
gene05764-v1.0-hybrid
I
0.778
gene07496-v1.0-hybrid
Fragaria vesca
gene07496-v1.0-hybrid
I
0.689
gene12682-v1.0-hybrid
Fragaria vesca
gene12682-v1.0-hybrid
I
0.761
gene25445-v1.0-hybrid
Fragaria vesca
gene25445-v1.0-hybrid
I
0.729
Gorai.003G030800
Gossypium raimondii
Gorai.003G030800
I
0.845
Gorai.005G230800
Gossypium raimondii
Gorai.005G230800
I
0.784
Gorai.007G224200
Gossypium raimondii
Gorai.007G224200
I
0.845
Lus10011546.g
Linum usitatissimum
Lus10011546.g
I
0.768
Lus10012092.g
Linum usitatissimum
Lus10012092.g
I
0.733
Lus10014653.g
Linum usitatissimum
Lus10014653.g
I
0.749
Lus10019260.g
Linum usitatissimum
Lus10019260.g
I
0.768
Lus10025203.g
Linum usitatissimum
Lus10025203.g
I
0.733
Lus10027621.g
Linum usitatissimum
Lus10027621.g
I
0.740
Lus10030935.g
Linum usitatissimum
Lus10030935.g
I
0.715
Lus10033775.g
Linum usitatissimum
Lus10033775.g
I
0.749
Lus10040111.g
Linum usitatissimum
Lus10040111.g
I
0.715
MDP0000234807
Malus domestica
MDP0000234807
I
0.718
MDP0000239354
Malus domestica
MDP0000239354
I
0.736
MDP0000265359
Malus domestica
MDP0000265359
I
0.741
orange1.1g020653m.g
Citrus sinensis
orange1.1g020653m.g
I
0.845
orange1.1g022048m.g
Citrus sinensis
orange1.1g022048m.g
I
0.749
orange1.1g024128m.g
Citrus sinensis
orange1.1g024128m.g
I
0.761
Pavir.Ea02064
Panicum virgatum
Pavir.Ea02064
I
0.693
Pavir.Ea02570
Panicum virgatum
Pavir.Ea02570
I
0.665
Pavir.Eb02802
Panicum virgatum
Pavir.Eb02802
I
0.665
Pavir.J27218
Panicum virgatum
Pavir.J27218
I
0.693
SapurV1A.0005s0260
Salix purpurea
SapurV1A.0005s0260
I
0.756
SapurV1A.0019s0460
Salix purpurea
SapurV1A.0019s0460
I
0.749
SapurV1A.0087s0150
Salix purpurea
SapurV1A.0087s0150
I
0.741
SapurV1A.0108s0150
Salix purpurea
SapurV1A.0108s0150
I
0.741
SapurV1A.0235s0100
Salix purpurea
SapurV1A.0235s0100
I
0.786
SapurV1A.1368s0050
Salix purpurea
SapurV1A.1368s0050
I
0.786
Thhalv10004691m.g
Eutrema salsugineum
Thhalv10004691m.g
I
0.899
Thhalv10010562m.g
Eutrema salsugineum
Thhalv10010562m.g
I
0.881
Thhalv10011686m.g
Eutrema salsugineum
Thhalv10011686m.g
I
0.731
PK00568.1
Cannabis sativa
PK00568.1
I
0.750
PK19870.1
Cannabis sativa
PK19870.1
I
0.749
chr2.LjT13P17.300.nd
Lotus japonicus
chr2.LjT13P17.300.nd
I
0.662
chr3.LjT02L14.30.nd
Lotus japonicus
chr3.LjT02L14.30.nd
I
0.662
LjSGA_016825.2
Lotus japonicus
LjSGA_016825.2
I
0.662
LjSGA_029815.1
Lotus japonicus
LjSGA_029815.1
I
0.662
LjT25P15.150.nd
Lotus japonicus
LjT25P15.150.nd
I
0.736
PDK_20s1413011g001
Phoenix dactylifera
PDK_20s1413011g001
I
0.743
PDK_20s1467521g002
Phoenix dactylifera
PDK_20s1467521g002
I
0.756
PDK_20s1888511g002
Phoenix dactylifera
PDK_20s1888511g002
I
0.709