CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
Bo1g144680
(
Brassica oleracea
)
Myb/SANT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00249 (Myb_DNA-binding)
IPR014778
Bo1g144680
T267115_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
PK07741.1
M01277_2.00
Cannabis sativa
HAMCBRHHN
NDDYVGKTD
PBM
Lambert et al.(2019)
pTH11469
0.727
0.796
MYB1
M07068_2.00
Arabidopsis thaliana
HDNNDNHWHWAACSGYHWH
DWDRCSGTTWDWDNHNNHD
Dap-seq
OMalley et al.(2016)
MYB1_col_a
0.709
0.806
MYB44
M01082_2.00
Arabidopsis thaliana
HAACBRHHN
NDDYVGTTD
PBM
Sullivan et al.(2014)
pTH7078
0.674
0.677
MYB44
M07155_2.00
Arabidopsis thaliana
HDTAACBGWHW
WDWCVGTTAHD
Dap-seq
OMalley et al.(2016)
MYB44_colamp_a
0.674
0.677
MYB44
M07156_2.00
Arabidopsis thaliana
HAACBRWHWWAACBGHHWH
DWDDCVGTTWWDWYVGTTD
Dap-seq
OMalley et al.(2016)
MYB44_col
0.674
0.677
MYB73
M07114_2.00
Arabidopsis thaliana
TAACBGWHWHW
WDWDWCVGTTA
Dap-seq
OMalley et al.(2016)
MYB73_col_a
0.673
0.688
PK28565.1
M02357_2.00
Cannabis sativa
TAACBGTY
RACVGTTA
PBM
Weirauch et al.(2014)
pTH9653
0.669
0.710
AtMYB70
M01071_2.00
Arabidopsis thaliana
HAACBRHHN
NDDYVGTTD
PBM
Sullivan et al.(2014)
pTH8588
0.669
0.699
AtMYB70
M07048_2.00
Arabidopsis thaliana
YAACBGWHWWAAMN
NKTTWWDWCVGTTR
Dap-seq
OMalley et al.(2016)
MYB70_col_a
0.669
0.699
For this family, TFs with SR scores >
0.661
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Bo1g144680.1
Myb
43
89
KGTWSREEDVMLSELVEKFGPRNWSSMARSIPGRSGKSCRLRWGNQL
Bo1g144680.1
Myb
95
140
RNPFTEVEDEAIITAHAIHGNKWSIIAKLLPGRTDNAIKNHWNATL
Links
Other
Myb/SANT
family TFs
Other
Brassica oleracea
TFs
166 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Bra034057
Brassica rapa
Bra034057
I
0.898
Bo7g117880
Brassica oleracea
Bo7g117880
I
0.850
Bra001323
Brassica rapa
Bra001323
I
0.826
Bo3g062160
Brassica oleracea
Bo3g062160
I
0.781
Bostr.22252s0145
Boechera stricta
Bostr.22252s0145
I
0.778
Aquca_009_00809
Aquilegia coerulea
Aquca_009_00809
I
0.762
Thhalv10021963m.g
Eutrema salsugineum
Thhalv10021963m.g
I
0.752
Bra007186
Brassica rapa
Bra007186
I
0.749
OMERI01G34370
Oryza meridionalis
OMERI01G34370
I
0.743
BGIOSGA000485
Oryza indica
BGIOSGA000485
I
0.740
Bo8g090160
Brassica oleracea
Bo8g090160
I
0.740
OBART01G37390
Oryza barthii
OBART01G37390
I
0.740
OGLUM01G41330
Oryza glumaepatula
OGLUM01G41330
I
0.740
OLONG_001357
Oryza longistaminata
OLONG_001357
I
0.740
ONIVA01G42300
Oryza nivara
ONIVA01G42300
I
0.740
OPUNC01G36300
Oryza punctata
OPUNC01G36300
I
0.740
ORGLA01G0312200
Oryza glaberrima
ORGLA01G0312200
I
0.740
ORUFI01G40770
Oryza rufipogon
ORUFI01G40770
I
0.740
OS01G0850400
Oryza sativa
OS01G0850400
I
0.740
Bostr.20505s0177
Boechera stricta
Bostr.20505s0177
I
0.740
Thhalv10010431m.g
Eutrema salsugineum
Thhalv10010431m.g
I
0.740
e_gw1.53.214.1
Physcomitrella patens
e_gw1.53.214.1
I
0.739
e_gw1.72.10.1
Physcomitrella patens
e_gw1.72.10.1
I
0.739
Eucgr.K03010
Eucalyptus grandis
Eucgr.K03010
I
0.729
GSMUA_Achr9G03720_001
Musa acuminata
GSMUA_Achr9G03720_001
I
0.727
PK07741.1
Cannabis sativa
PK07741.1
D
0.727
AtMYB1
Arabidopsis lyrata
scaffold_301043.1
I
0.713
Cagra.2515s0014
Capsella grandiflora
Cagra.2515s0014
I
0.713
Carubv10013882m.g
Capsella rubella
Carubv10013882m.g
I
0.713
GSMUA_Achr5G28780_001
Musa acuminata
GSMUA_Achr5G28780_001
I
0.710
LPERR01G32110
Leersia perrieri
LPERR01G32110
I
0.710
OB01G46120
Oryza brachyantha
OB01G46120
I
0.710
MYB1
Arabidopsis thaliana
AT3G09230
D
0.709
TCM_042629
Theobroma cacao
TCM_042629
I
0.708
Gorai.011G278500
Gossypium raimondii
Gorai.011G278500
I
0.708
Pm018862
Prunus mume
Pm018862
I
0.707
Bra005006
Brassica rapa
Bra005006
I
0.706
VIT_13s0019g03200
Vitis vinifera
VIT_13s0019g03200
I
0.705
Thhalv10016794m.g
Eutrema salsugineum
Thhalv10016794m.g
I
0.705
e_gw1.9.342.1
Physcomitrella patens
e_gw1.9.342.1
I
0.704
Bo4g025810
Brassica oleracea
Bo4g025810
I
0.701
cassava1242.valid.m1
Manihot esculenta
cassava1242.valid.m1
I
0.701
MYB109
Arabidopsis thaliana
AT3G55730
I
0.700
MYB25
Arabidopsis lyrata
Al_scaffold_0004_2572
I
0.698
AMTR_s00029p00183640
Amborella trichopoda
AMTR_s00029p00183640
I
0.698
Bostr.23794s0078
Boechera stricta
Bostr.23794s0078
I
0.698
evm.TU.supercontig_56.79
Carica papaya
evm.TU.supercontig_56.79
I
0.696
gene18756-v1.0-hybrid
Fragaria vesca
gene18756-v1.0-hybrid
I
0.696
Carubv10023692m.g
Capsella rubella
Carubv10023692m.g
I
0.694
POPTR_0008s07100
Populus trichocarpa
POPTR_0008s07100
I
0.692
Cucsa.073130
Cucumis sativus
Cucsa.073130
I
0.692
SapurV1A.0597s0060
Salix purpurea
SapurV1A.0597s0060
I
0.691
GLYMA03G15810
Glycine max
GLYMA03G15810
I
0.690
MLOC_10322
Hordeum vulgare
MLOC_10322
I
0.690
Ca_12468
Cicer arietinum
Ca_12468
I
0.690
Si001686m.g
Setaria italica
Si001686m.g
I
0.688
Cagra.10445s0001
Capsella grandiflora
Cagra.10445s0001
I
0.688
Carubv10023414m.g
Capsella rubella
Carubv10023414m.g
I
0.688
GLYMA04G04490
Glycine max
GLYMA04G04490
I
0.687
gene21001-v1.0-hybrid
Fragaria vesca
gene21001-v1.0-hybrid
I
0.687
GSMUA_Achr6G33470_001
Musa acuminata
GSMUA_Achr6G33470_001
I
0.684
GLYMA14G06870
Glycine max
GLYMA14G06870
I
0.683
mgf018580m
Mimulus guttatus
mgf018580m
I
0.683
GLYMA01G26650
Glycine max
GLYMA01G26650
I
0.681
mgf002573m
Mimulus guttatus
mgf002573m
I
0.680
POPTR_0002s12410
Populus trichocarpa
POPTR_0002s12410
I
0.679
Cla022947
Citrullus lanatus
Cla022947
I
0.679
Cucsa.395890
Cucumis sativus
Cucsa.395890
I
0.679
SapurV1A.0167s0310
Salix purpurea
SapurV1A.0167s0310
I
0.679
GLYMA14G09540
Glycine max
GLYMA14G09540
I
0.678
PGSC0003DMG400024983
Solanum tuberosum
PGSC0003DMG400024983
I
0.678
Solyc02g092930.1
Solanum lycopersicum
Solyc02g092930.1
I
0.678
TCM_000696
Theobroma cacao
TCM_000696
I
0.678
29970.m000987
Ricinus communis
29970.m000987
I
0.678
cassava43120.valid.m1
Manihot esculenta
cassava43120.valid.m1
I
0.678
Aquca_007_00776
Aquilegia coerulea
Aquca_007_00776
I
0.678
Bostr.27895s0157
Boechera stricta
Bostr.27895s0157
I
0.678
Ciclev10026107m.g
Citrus clementina
Ciclev10026107m.g
I
0.678
evm.TU.supercontig_6.98
Carica papaya
evm.TU.supercontig_6.98
I
0.678
Gorai.007G055600
Gossypium raimondii
Gorai.007G055600
I
0.678
Gorai.007G218100
Gossypium raimondii
Gorai.007G218100
I
0.678
MDP0000284922
Malus domestica
MDP0000284922
I
0.678
orange1.1g021071m.g
Citrus sinensis
orange1.1g021071m.g
I
0.678
mgf023922m
Mimulus guttatus
mgf023922m
I
0.677
Cla014191
Citrullus lanatus
Cla014191
I
0.676
Cucsa.102710
Cucumis sativus
Cucsa.102710
I
0.676
Cagra.0003s0013
Capsella grandiflora
Cagra.0003s0013
I
0.676
Carubv10017397m.g
Capsella rubella
Carubv10017397m.g
I
0.676
AMTR_s00006p00225600
Amborella trichopoda
AMTR_s00006p00225600
I
0.675
Eucgr.F00002
Eucalyptus grandis
Eucgr.F00002
I
0.675
MYB44
Arabidopsis thaliana
AT5G67300
D
0.674
Bo7g063830
Brassica oleracea
Bo7g063830
I
0.674
Bra012149
Brassica rapa
Bra012149
I
0.674
ATMYBR1
Arabidopsis lyrata
scaffold_803378.1
I
0.674
Bostr.0568s0154
Boechera stricta
Bostr.0568s0154
I
0.674
Cagra.0342s0017
Capsella grandiflora
Cagra.0342s0017
I
0.674
Carubv10027659m.g
Capsella rubella
Carubv10027659m.g
I
0.674
Gorai.012G078200
Gossypium raimondii
Gorai.012G078200
I
0.674
Thhalv10004676m.g
Eutrema salsugineum
Thhalv10004676m.g
I
0.674
MYB73
Arabidopsis thaliana
AT4G37260
D
0.673
Bo1g004900
Brassica oleracea
Bo1g004900
I
0.673
Bra010593
Brassica rapa
Bra010593
I
0.673
Bra011749
Brassica rapa
Bra011749
I
0.673
Bostr.7867s1585
Boechera stricta
Bostr.7867s1585
I
0.673
Cagra.1232s0025
Capsella grandiflora
Cagra.1232s0025
I
0.673
Carubv10007638m.g
Capsella rubella
Carubv10007638m.g
I
0.673
SapurV1A.0650s0070
Salix purpurea
SapurV1A.0650s0070
I
0.673
Thhalv10025742m.g
Eutrema salsugineum
Thhalv10025742m.g
I
0.673
chr2.LjT13M01.180.nd
Lotus japonicus
chr2.LjT13M01.180.nd
I
0.672
PGSC0003DMG400020338
Solanum tuberosum
PGSC0003DMG400020338
I
0.671
Solyc09g011780.2
Solanum lycopersicum
Solyc09g011780.2
I
0.671
evm.TU.supercontig_19.238
Carica papaya
evm.TU.supercontig_19.238
I
0.671
SapurV1A.0709s0060
Salix purpurea
SapurV1A.0709s0060
I
0.671
Bo3g153550
Brassica oleracea
Bo3g153550
I
0.670
GLYMA17G35620
Glycine max
GLYMA17G35620
I
0.670
AtMYB70
Arabidopsis thaliana
AT2G23290
D
0.669
AtMYB70
Arabidopsis lyrata
fgenesh2_kg.4__260__AT2G23290.1
I
0.669
GLYMA01G39740
Glycine max
GLYMA01G39740
I
0.669
GLYMA11G05550
Glycine max
GLYMA11G05550
I
0.669
MTR_5g016510
Medicago truncatula
MTR_5g016510
I
0.669
PRUPE_ppa008450mg
Prunus persica
PRUPE_ppa008450mg
I
0.669
VIT_18s0001g09850
Vitis vinifera
VIT_18s0001g09850
I
0.669
Cla004431
Citrullus lanatus
Cla004431
I
0.669
cassava2215.valid.m1
Manihot esculenta
cassava2215.valid.m1
I
0.669
Lus10010260.g
Linum usitatissimum
Lus10010260.g
I
0.669
Lus10028250.g
Linum usitatissimum
Lus10028250.g
I
0.669
Lus10030336.g
Linum usitatissimum
Lus10030336.g
I
0.669
Lus10040239.g
Linum usitatissimum
Lus10040239.g
I
0.669
MDP0000196986
Malus domestica
MDP0000196986
I
0.669
MDP0000232454
Malus domestica
MDP0000232454
I
0.669
PK28565.1
Cannabis sativa
PK28565.1
D
0.669
chr2.CM0250.240.nd
Lotus japonicus
chr2.CM0250.240.nd
I
0.669
GSMUA_Achr4G12950_001
Musa acuminata
GSMUA_Achr4G12950_001
I
0.667
POPTR_0009s09890
Populus trichocarpa
POPTR_0009s09890
I
0.667
Cla006872
Citrullus lanatus
Cla006872
I
0.667
VIT_07s0129g01050
Vitis vinifera
VIT_07s0129g01050
I
0.666
Ca_02182
Cicer arietinum
Ca_02182
I
0.666
mgf014089m
Mimulus guttatus
mgf014089m
I
0.666
Eucgr.H02226
Eucalyptus grandis
Eucgr.H02226
I
0.666
Lus10007503.g
Linum usitatissimum
Lus10007503.g
I
0.666
Thhalv10000438m.g
Eutrema salsugineum
Thhalv10000438m.g
I
0.666
Bo2g167960
Brassica oleracea
Bo2g167960
I
0.665
TRAES3BF039800050CFD_g
Triticum aestivum
TRAES3BF039800050CFD_g
I
0.665
Aquca_045_00169
Aquilegia coerulea
Aquca_045_00169
I
0.665
MYB25
Arabidopsis thaliana
AT2G39880
I
0.664
GSMUA_AchrUn_randomG01280_001
Musa acuminata
GSMUA_AchrUn_randomG01280_001
I
0.664
MTR_6g015455
Medicago truncatula
MTR_6g015455
I
0.664
Eucgr.J00250
Eucalyptus grandis
Eucgr.J00250
I
0.664
evm.TU.supercontig_21.145
Carica papaya
evm.TU.supercontig_21.145
I
0.664
SapurV1A.0339s0020
Salix purpurea
SapurV1A.0339s0020
I
0.664
TCM_021796
Theobroma cacao
TCM_021796
I
0.663
SapurV1A.0708s0130
Salix purpurea
SapurV1A.0708s0130
I
0.663
29814.m000736
Ricinus communis
29814.m000736
I
0.662
cassava41257.m1
Manihot esculenta
cassava41257.m1
I
0.662
gene09039-v1.0-hybrid
Fragaria vesca
gene09039-v1.0-hybrid
I
0.662
GSMUA_Achr3G28230_001
Musa acuminata
GSMUA_Achr3G28230_001
I
0.661
GSMUA_Achr4G09450_001
Musa acuminata
GSMUA_Achr4G09450_001
I
0.661
GSMUA_Achr9G22600_001
Musa acuminata
GSMUA_Achr9G22600_001
I
0.661
VIT_08s0007g01540
Vitis vinifera
VIT_08s0007g01540
I
0.661
30170.m013698
Ricinus communis
30170.m013698
I
0.661
cassava47374.m1
Manihot esculenta
cassava47374.m1
I
0.661
Ciclev10001979m.g
Citrus clementina
Ciclev10001979m.g
I
0.661
MDP0000807341
Malus domestica
MDP0000807341
I
0.661
orange1.1g022144m.g
Citrus sinensis
orange1.1g022144m.g
I
0.661
PK12959.1
Cannabis sativa
PK12959.1
I
0.661
PK17282.1
Cannabis sativa
PK17282.1
I
0.661