Bo3g004970 (Brassica oleracea)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 Bo3g004970 T267208_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SRM1
M02307_2.00 		Arabidopsis thaliana
NNHNATCNN
NNGATNDNN		 PBM
Weirauch et al.(2014)
pTH7080 		0.803 0.946
SRM1
M07121_2.00 		Arabidopsis thaliana
YCTTATCYWHW
WDWRGATAAGR		 Dap-seq
OMalley et al.(2016)
At5g08520_colamp_a 		0.803 0.946
SRM1
M07122_2.00 		Arabidopsis thaliana
YCTTATCYWHWWH
DWWDWRGATAAGR		 Dap-seq
OMalley et al.(2016)
At5g08520_col_b 		0.803 0.946
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bo3g004970.1 Myb 119 164

Links

Other Myb/SANT family TFs
Other Brassica oleracea TFs

31 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bo2g009130 Brassica oleracea Bo2g009130 I 0.898
Bra028654 Brassica rapa Bra028654 I 0.883
Bo9g174380 Brassica oleracea Bo9g174380 I 0.866
Bra009346 Brassica rapa Bra009346 I 0.846
Cagra.1365s0066 Capsella grandiflora Cagra.1365s0066 I 0.837
Carubv10001525m.g Capsella rubella Carubv10001525m.g I 0.837
Thhalv10014203m.g Eutrema salsugineum Thhalv10014203m.g I 0.818
SRM1 Arabidopsis thaliana AT5G08520 D 0.803
fgenesh2_kg.6__825__AT5G08520.1 Arabidopsis lyrata fgenesh2_kg.6__825__AT5G08520.1 I 0.798
Bostr.13129s0103 Boechera stricta Bostr.13129s0103 I 0.790
Bostr.10199s0068 Boechera stricta Bostr.10199s0068 I 0.702
Gorai.012G135600 Gossypium raimondii Gorai.012G135600 I 0.695
Ciclev10032259m.g Citrus clementina Ciclev10032259m.g I 0.687
orange1.1g022439m.g Citrus sinensis orange1.1g022439m.g I 0.687
Eucgr.G02591 Eucalyptus grandis Eucgr.G02591 I 0.683
Cla009230 Citrullus lanatus Cla009230 I 0.682
Cucsa.013870 Cucumis sativus Cucsa.013870 I 0.682
Gorai.005G212900 Gossypium raimondii Gorai.005G212900 I 0.674
Gorai.013G067600 Gossypium raimondii Gorai.013G067600 I 0.674
GLYMA20G01450 Glycine max GLYMA20G01450 I 0.673
30131.m007263 Ricinus communis 30131.m007263 I 0.673
SapurV1A.0234s0050 Salix purpurea SapurV1A.0234s0050 I 0.673
GLYMA07G28310 Glycine max GLYMA07G28310 I 0.668
GSMUA_Achr9G20620_001 Musa acuminata GSMUA_Achr9G20620_001 I 0.668
SapurV1A.0333s0040 Salix purpurea SapurV1A.0333s0040 I 0.668
Thhalv10005383m.g Eutrema salsugineum Thhalv10005383m.g I 0.668
PRUPE_ppa009396mg Prunus persica PRUPE_ppa009396mg I 0.667
GSMUA_Achr1G17730_001 Musa acuminata GSMUA_Achr1G17730_001 I 0.663
TCM_007672 Theobroma cacao TCM_007672 I 0.663
cassava18614.valid.m1 Manihot esculenta cassava18614.valid.m1 I 0.663
Gorai.008G147400 Gossypium raimondii Gorai.008G147400 I 0.663