CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Bo3g107740
(
Brassica oleracea
)
Myb/SANT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00249 (Myb_DNA-binding)
IPR014778
Bo3g107740
T267276_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
MYB99
M07151_2.00
Arabidopsis thaliana
NYYYACCWAMYHH
DDRKTWGGTRRRN
Dap-seq
OMalley et al.(2016)
MYB99_col_a
0.770
0.903
MYB99
M07152_2.00
Arabidopsis thaliana
YHYACCTAMYH
DRKTAGGTRDR
Dap-seq
OMalley et al.(2016)
MYB99_colamp_a
0.770
0.903
PK21166.1
M01281_2.00
Cannabis sativa
HACCWAMY
RKTWGGTD
PBM
Lambert et al.(2019)
pTH11255
0.752
0.785
MYB43
M07127_2.00
Arabidopsis thaliana
NYYYACCWAMYWH
DWRKTWGGTRRRN
Dap-seq
OMalley et al.(2016)
MYB43_col_a
0.736
0.742
For this family, TFs with SR scores >
0.661
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Bo3g107740.1
Myb
15
65
KGPWTADEDGKLVDFLRTRGASGGWCWRDVPKLAGLKRCGKSCRLRWTNYL
Bo3g107740.1
Myb
71
116
RGLFSEEEIQLVIDLHAQLGNRWSKIAAELPGRTDNDIKNYWNTHI
Links
Other
Myb/SANT
family TFs
Other
Brassica oleracea
TFs
240 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Thhalv10004868m.g
Eutrema salsugineum
Thhalv10004868m.g
I
0.821
Cagra.4003s0023
Capsella grandiflora
Cagra.4003s0023
I
0.817
Carubv10028436m.g
Capsella rubella
Carubv10028436m.g
I
0.817
MYB99
Arabidopsis lyrata
scaffold_802887.1
I
0.800
Bostr.0568s0574
Boechera stricta
Bostr.0568s0574
I
0.800
F775_29159
Aegilops tauschii
F775_29159
I
0.794
MLOC_14021
Hordeum vulgare
MLOC_14021
I
0.794
Traes_7DS_5100A9609
Triticum aestivum
Traes_7DS_5100A9609
I
0.794
Pavir.Db01743
Panicum virgatum
Pavir.Db01743
I
0.787
BGIOSGA022649
Oryza indica
BGIOSGA022649
I
0.785
GRMZM2G048910
Zea mays
GRMZM2G048910
I
0.785
OB06G19130
Oryza brachyantha
OB06G19130
I
0.785
ORGLA06G0093500
Oryza glaberrima
ORGLA06G0093500
I
0.785
ORUFI06G10280
Oryza rufipogon
ORUFI06G10280
I
0.785
OS06G0258000
Oryza sativa
OS06G0258000
I
0.785
Sb10g009330
Sorghum bicolor
Sb10g009330
I
0.785
Eucgr.J01601
Eucalyptus grandis
Eucgr.J01601
I
0.784
Lus10002296.g
Linum usitatissimum
Lus10002296.g
I
0.775
Lus10004043.g
Linum usitatissimum
Lus10004043.g
I
0.775
GLYMA17G14291
Glycine max
GLYMA17G14291
I
0.773
BGIOSGA005676
Oryza indica
BGIOSGA005676
I
0.772
GRMZM2G055158
Zea mays
GRMZM2G055158
I
0.772
OB02G38450
Oryza brachyantha
OB02G38450
I
0.772
OGLUM02G32070
Oryza glumaepatula
OGLUM02G32070
I
0.772
ORGLA02G0269000
Oryza glaberrima
ORGLA02G0269000
I
0.772
ORUFI02G33090
Oryza rufipogon
ORUFI02G33090
I
0.772
OS02G0732600
Oryza sativa
OS02G0732600
I
0.772
Sb04g028850
Sorghum bicolor
Sb04g028850
I
0.772
Si020225m.g
Setaria italica
Si020225m.g
I
0.772
Pavir.Aa00435
Panicum virgatum
Pavir.Aa00435
I
0.772
MYB99
Arabidopsis thaliana
AT5G62320
D
0.770
POPTR_0012s14540
Populus trichocarpa
POPTR_0012s14540
I
0.770
Si007017m.g
Setaria italica
Si007017m.g
I
0.770
TCM_014956
Theobroma cacao
TCM_014956
I
0.770
VIT_16s0022g01210
Vitis vinifera
VIT_16s0022g01210
I
0.770
Cla003626
Citrullus lanatus
Cla003626
I
0.770
cassava47045.m1
Manihot esculenta
cassava47045.m1
I
0.770
Cucsa.115620
Cucumis sativus
Cucsa.115620
I
0.770
Ciclev10005666m.g
Citrus clementina
Ciclev10005666m.g
I
0.770
evm.TU.supercontig_3.300
Carica papaya
evm.TU.supercontig_3.300
I
0.770
gene21264-v1.0-hybrid
Fragaria vesca
gene21264-v1.0-hybrid
I
0.770
orange1.1g024849m.g
Citrus sinensis
orange1.1g024849m.g
I
0.770
TCM_019116
Theobroma cacao
TCM_019116
I
0.769
Gorai.004G064100
Gossypium raimondii
Gorai.004G064100
I
0.769
Gorai.008G060100
Gossypium raimondii
Gorai.008G060100
I
0.769
chr4.CM0126.370.nd
Lotus japonicus
chr4.CM0126.370.nd
I
0.769
GLYMA05G03780
Glycine max
GLYMA05G03780
I
0.767
POPTR_0001s07830
Populus trichocarpa
POPTR_0001s07830
I
0.767
POPTR_0003s11360
Populus trichocarpa
POPTR_0003s11360
I
0.767
PRUPE_ppa021568mg
Prunus persica
PRUPE_ppa021568mg
I
0.767
TCM_016054
Theobroma cacao
TCM_016054
I
0.767
VIT_00s1241g00010
Vitis vinifera
VIT_00s1241g00010
I
0.767
Cla011736
Citrullus lanatus
Cla011736
I
0.767
Pm023573
Prunus mume
Pm023573
I
0.767
30190.m011004
Ricinus communis
30190.m011004
I
0.767
cassava33331.m1
Manihot esculenta
cassava33331.m1
I
0.767
Ciclev10021695m.g
Citrus clementina
Ciclev10021695m.g
I
0.767
Eucgr.D02014
Eucalyptus grandis
Eucgr.D02014
I
0.767
gene32268-v1.0-hybrid
Fragaria vesca
gene32268-v1.0-hybrid
I
0.767
Gorai.003G168100
Gossypium raimondii
Gorai.003G168100
I
0.767
Gorai.004G201900
Gossypium raimondii
Gorai.004G201900
I
0.767
Gorai.008G238800
Gossypium raimondii
Gorai.008G238800
I
0.767
orange1.1g024441m.g
Citrus sinensis
orange1.1g024441m.g
I
0.767
SapurV1A.0045s0090
Salix purpurea
SapurV1A.0045s0090
I
0.767
SapurV1A.0634s0020
Salix purpurea
SapurV1A.0634s0020
I
0.767
Aquca_013_00661
Aquilegia coerulea
Aquca_013_00661
I
0.766
MDP0000602739
Malus domestica
MDP0000602739
I
0.764
MTR_4g102380
Medicago truncatula
MTR_4g102380
I
0.763
Ca_08722
Cicer arietinum
Ca_08722
I
0.763
MDP0000682032
Malus domestica
MDP0000682032
I
0.763
PK08857.1
Cannabis sativa
PK08857.1
I
0.763
Eucgr.K00153
Eucalyptus grandis
Eucgr.K00153
I
0.761
GLYMA02G41180
Glycine max
GLYMA02G41180
I
0.760
GLYMA11G33620
Glycine max
GLYMA11G33620
I
0.760
GLYMA14G39530
Glycine max
GLYMA14G39530
I
0.760
GLYMA18G04580
Glycine max
GLYMA18G04580
I
0.760
MTR_3g065440
Medicago truncatula
MTR_3g065440
I
0.760
MTR_5g078140
Medicago truncatula
MTR_5g078140
I
0.760
PRUPE_ppa009966mg
Prunus persica
PRUPE_ppa009966mg
I
0.760
Ca_13286
Cicer arietinum
Ca_13286
I
0.760
Cla009311
Citrullus lanatus
Cla009311
I
0.760
Pm013020
Prunus mume
Pm013020
I
0.760
cassava6251.valid.m1
Manihot esculenta
cassava6251.valid.m1
I
0.760
Cucsa.006170
Cucumis sativus
Cucsa.006170
I
0.760
Ciclev10012265m.g
Citrus clementina
Ciclev10012265m.g
I
0.760
Eucgr.F02864
Eucalyptus grandis
Eucgr.F02864
I
0.760
Gorai.001G205300
Gossypium raimondii
Gorai.001G205300
I
0.760
orange1.1g021498m.g
Citrus sinensis
orange1.1g021498m.g
I
0.760
GSMUA_Achr5G05910_001
Musa acuminata
GSMUA_Achr5G05910_001
I
0.758
PGSC0003DMG400004780
Solanum tuberosum
PGSC0003DMG400004780
I
0.758
Solyc08g079270.2
Solanum lycopersicum
Solyc08g079270.2
I
0.758
cassava2058.valid.m1
Manihot esculenta
cassava2058.valid.m1
I
0.758
GRMZM2G126566
Zea mays
GRMZM2G126566
I
0.757
cassava30009.valid.m1
Manihot esculenta
cassava30009.valid.m1
I
0.757
cassava21367.m1
Manihot esculenta
cassava21367.m1
I
0.756
BRADI3G56917
Brachypodium distachyon
BRADI3G56917
I
0.755
F775_17058
Aegilops tauschii
F775_17058
I
0.755
TRIUR3_16495
Triticum urartu
TRIUR3_16495
I
0.755
Lus10038913.g
Linum usitatissimum
Lus10038913.g
I
0.755
Pavir.Da01229
Panicum virgatum
Pavir.Da01229
I
0.755
OPUNC08G12780
Oryza punctata
OPUNC08G12780
I
0.754
Bo9g163020
Brassica oleracea
Bo9g163020
I
0.753
Gorai.006G195700
Gossypium raimondii
Gorai.006G195700
I
0.753
MDP0000787808
Malus domestica
MDP0000787808
I
0.753
SapurV1A.0129s0270
Salix purpurea
SapurV1A.0129s0270
I
0.753
BRADI3G36370
Brachypodium distachyon
BRADI3G36370
I
0.752
GSMUA_Achr5G23110_001
Musa acuminata
GSMUA_Achr5G23110_001
I
0.752
MYB43
Vitis vinifera
VIT_14s0006g00450
I
0.752
PK21166.1
Cannabis sativa
PK21166.1
D
0.752
BGIOSGA028709
Oryza indica
BGIOSGA028709
I
0.751
ORGLA08G0134400
Oryza glaberrima
ORGLA08G0134400
I
0.751
PRUPE_ppa011549mg
Prunus persica
PRUPE_ppa011549mg
I
0.751
Pm019472
Prunus mume
Pm019472
I
0.751
MYB42
Arabidopsis thaliana
AT4G12350
I
0.750
GLYMA11G03300
Glycine max
GLYMA11G03300
I
0.750
Cucsa.302180
Cucumis sativus
Cucsa.302180
I
0.750
mgf017719m
Mimulus guttatus
mgf017719m
I
0.750
Lus10024589.g
Linum usitatissimum
Lus10024589.g
I
0.750
Lus10032226.g
Linum usitatissimum
Lus10032226.g
I
0.750
Gorai.006G064000
Gossypium raimondii
Gorai.006G064000
I
0.749
Lus10004042.g
Linum usitatissimum
Lus10004042.g
I
0.746
Pavir.Ab02913
Panicum virgatum
Pavir.Ab02913
I
0.745
BGIOSGA030727
Oryza indica
BGIOSGA030727
I
0.744
GRMZM2G169356
Zea mays
GRMZM2G169356
I
0.744
OB09G16260
Oryza brachyantha
OB09G16260
I
0.744
ORGLA09G0071400
Oryza glaberrima
ORGLA09G0071400
I
0.744
ORUFI09G10320
Oryza rufipogon
ORUFI09G10320
I
0.744
OS09G0401000
Oryza sativa
OS09G0401000
I
0.744
Pavir.Ba02148
Panicum virgatum
Pavir.Ba02148
I
0.744
Bo6g099800
Brassica oleracea
Bo6g099800
I
0.743
Bra004155
Brassica rapa
Bra004155
I
0.743
MYB20
Arabidopsis lyrata
scaffold_201335.1
I
0.743
Bostr.26959s0295
Boechera stricta
Bostr.26959s0295
I
0.743
Cagra.1300s0004
Capsella grandiflora
Cagra.1300s0004
I
0.743
Carubv10020766m.g
Capsella rubella
Carubv10020766m.g
I
0.743
gene30520-v1.0-hybrid
Fragaria vesca
gene30520-v1.0-hybrid
I
0.743
Thhalv10019852m.g
Eutrema salsugineum
Thhalv10019852m.g
I
0.743
BRADI4G36210
Brachypodium distachyon
BRADI4G36210
I
0.742
BGIOSGA029380
Oryza indica
BGIOSGA029380
I
0.740
GRMZM2G037650
Zea mays
GRMZM2G037650
I
0.740
GRMZM2G138427
Zea mays
GRMZM2G138427
I
0.740
OB09G24070
Oryza brachyantha
OB09G24070
I
0.740
OLONG_005336
Oryza longistaminata
OLONG_005336
I
0.740
ORGLA09G0137500
Oryza glaberrima
ORGLA09G0137500
I
0.740
OS09G0532900
Oryza sativa
OS09G0532900
I
0.740
Si014144m.g
Setaria italica
Si014144m.g
I
0.740
Pavir.Fb01563
Panicum virgatum
Pavir.Fb01563
I
0.740
Pavir.Fb02321
Panicum virgatum
Pavir.Fb02321
I
0.740
Pavir.J36915
Panicum virgatum
Pavir.J36915
I
0.740
Bo1g028520
Brassica oleracea
Bo1g028520
I
0.739
MYB85
Arabidopsis lyrata
fgenesh2_kg.7__2034__AT4G22680.1
I
0.739
Thhalv10027281m.g
Eutrema salsugineum
Thhalv10027281m.g
I
0.739
MYB20
Arabidopsis thaliana
AT1G66230
I
0.738
BGIOSGA026529
Oryza indica
BGIOSGA026529
I
0.737
ORGLA08G0217800
Oryza glaberrima
ORGLA08G0217800
I
0.737
ORUFI08G25210
Oryza rufipogon
ORUFI08G25210
I
0.737
Cagra.14303s0002
Capsella grandiflora
Cagra.14303s0002
I
0.737
Carubv10003172m.g
Capsella rubella
Carubv10003172m.g
I
0.737
Pavir.Fa00850
Panicum virgatum
Pavir.Fa00850
I
0.737
MYB43
Arabidopsis thaliana
AT5G16600
D
0.736
GSMUA_Achr9G15640_001
Musa acuminata
GSMUA_Achr9G15640_001
I
0.736
MYB43
Arabidopsis lyrata
scaffold_601700.1
I
0.736
Bostr.2902s0397
Boechera stricta
Bostr.2902s0397
I
0.736
Cagra.0434s0026
Capsella grandiflora
Cagra.0434s0026
I
0.736
Carubv10001378m.g
Capsella rubella
Carubv10001378m.g
I
0.736
Thhalv10014086m.g
Eutrema salsugineum
Thhalv10014086m.g
I
0.736
Bra013633
Brassica rapa
Bra013633
I
0.735
GRMZM2G106558
Zea mays
GRMZM2G106558
I
0.735
LPERR08G19430
Leersia perrieri
LPERR08G19430
I
0.733
Cucsa.375180
Cucumis sativus
Cucsa.375180
I
0.733
PDK_20s1306131g002
Phoenix dactylifera
PDK_20s1306131g002
I
0.733
Bo2g013190
Brassica oleracea
Bo2g013190
I
0.732
BRADI3G42430
Brachypodium distachyon
BRADI3G42430
I
0.731
MLOC_50944
Hordeum vulgare
MLOC_50944
I
0.731
Lus10027197.g
Linum usitatissimum
Lus10027197.g
I
0.731
PGSC0003DMG400015668
Solanum tuberosum
PGSC0003DMG400015668
I
0.730
Solyc11g011050.1
Solanum lycopersicum
Solyc11g011050.1
I
0.730
Sb02g024250
Sorghum bicolor
Sb02g024250
I
0.729
OB08G29480
Oryza brachyantha
OB08G29480
I
0.728
Pavir.Ba02149
Panicum virgatum
Pavir.Ba02149
I
0.728
SapurV1A.0367s0020
Salix purpurea
SapurV1A.0367s0020
I
0.728
SapurV1A.0456s0310
Salix purpurea
SapurV1A.0456s0310
I
0.728
F775_13107
Aegilops tauschii
F775_13107
I
0.727
Sb02g024260
Sorghum bicolor
Sb02g024260
I
0.727
Sb07g024970
Sorghum bicolor
Sb07g024970
I
0.727
Traes_5BL_D85C0EF26
Triticum aestivum
Traes_5BL_D85C0EF26
I
0.727
Traes_5DL_46D39C394
Triticum aestivum
Traes_5DL_46D39C394
I
0.727
Pavir.Bb01872
Panicum virgatum
Pavir.Bb01872
I
0.727
BRADI1G44070
Brachypodium distachyon
BRADI1G44070
I
0.726
AMTR_s00091p00025820
Amborella trichopoda
AMTR_s00091p00025820
I
0.724
OB08G22860
Oryza brachyantha
OB08G22860
I
0.724
GSMUA_Achr4G19880_001
Musa acuminata
GSMUA_Achr4G19880_001
I
0.723
Si015412m.g
Setaria italica
Si015412m.g
I
0.723
MYB85
Arabidopsis thaliana
AT4G22680
I
0.722
Bo7g108060
Brassica oleracea
Bo7g108060
I
0.722
Bra019368
Brassica rapa
Bra019368
I
0.722
Bostr.7867s0052
Boechera stricta
Bostr.7867s0052
I
0.722
Cagra.6652s0005
Capsella grandiflora
Cagra.6652s0005
I
0.722
Carubv10005483m.g
Capsella rubella
Carubv10005483m.g
I
0.722
MYB42
Arabidopsis lyrata
fgenesh1_pm.C_scaffold_6002571
I
0.720
GLYMA01G42050
Glycine max
GLYMA01G42050
I
0.720
Bostr.25463s0081
Boechera stricta
Bostr.25463s0081
I
0.720
Thhalv10028864m.g
Eutrema salsugineum
Thhalv10028864m.g
I
0.720
GSMUA_Achr1G22380_001
Musa acuminata
GSMUA_Achr1G22380_001
I
0.718
GRMZM2G104551
Zea mays
GRMZM2G104551
I
0.715
Sb02g030900
Sorghum bicolor
Sb02g030900
I
0.715
BRADI4G29796
Brachypodium distachyon
BRADI4G29796
I
0.714
POPTR_0015s14600
Populus trichocarpa
POPTR_0015s14600
I
0.714
Pavir.J21364
Panicum virgatum
Pavir.J21364
I
0.714
GSMUA_Achr7G12520_001
Musa acuminata
GSMUA_Achr7G12520_001
I
0.713
POPTR_0004s08480
Populus trichocarpa
POPTR_0004s08480
I
0.713
POPTR_0017s02850
Populus trichocarpa
POPTR_0017s02850
I
0.713
Solyc04g014470.2
Solanum lycopersicum
Solyc04g014470.2
I
0.713
SapurV1A.0390s0060
Salix purpurea
SapurV1A.0390s0060
I
0.713
GSMUA_Achr1G18610_001
Musa acuminata
GSMUA_Achr1G18610_001
I
0.712
Si032498m.g
Setaria italica
Si032498m.g
I
0.710
GSMUA_Achr7G05680_001
Musa acuminata
GSMUA_Achr7G05680_001
I
0.707
GSMUA_Achr10G29970_001
Musa acuminata
GSMUA_Achr10G29970_001
I
0.705
F775_19511
Aegilops tauschii
F775_19511
I
0.698
Traes_5BL_30D8E6BE2
Triticum aestivum
Traes_5BL_30D8E6BE2
I
0.698
Traes_5DL_0B2C5ADF6
Triticum aestivum
Traes_5DL_0B2C5ADF6
I
0.698
Pavir.Bb01873
Panicum virgatum
Pavir.Bb01873
I
0.698
Si030711m.g
Setaria italica
Si030711m.g
I
0.697
Si031939m.g
Setaria italica
Si031939m.g
I
0.697
Si032544m.g
Setaria italica
Si032544m.g
I
0.697
SapurV1A.0102s0470
Salix purpurea
SapurV1A.0102s0470
I
0.697
SapurV1A.1318s0060
Salix purpurea
SapurV1A.1318s0060
I
0.697
Lus10010974.g
Linum usitatissimum
Lus10010974.g
I
0.693
MLOC_6696
Hordeum vulgare
MLOC_6696
I
0.687
Si030750m.g
Setaria italica
Si030750m.g
I
0.685
Pavir.Ba01239
Panicum virgatum
Pavir.Ba01239
I
0.685
Pavir.Bb02654
Panicum virgatum
Pavir.Bb02654
I
0.685
Bo3g165540
Brassica oleracea
Bo3g165540
I
0.681
ORUFI09G18880
Oryza rufipogon
ORUFI09G18880
I
0.680
Pavir.Ba02150
Panicum virgatum
Pavir.Ba02150
I
0.680
GSMUA_Achr5G17010_001
Musa acuminata
GSMUA_Achr5G17010_001
I
0.675
Bra020837
Brassica rapa
Bra020837
I
0.668
AMTR_s00049p00074250
Amborella trichopoda
AMTR_s00049p00074250
I
0.666
Solyc05g014290.2
Solanum lycopersicum
Solyc05g014290.2
I
0.663
Gorai.001G268000
Gossypium raimondii
Gorai.001G268000
I
0.663