CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

Bo4g178040 *(Brassica oleracea)* Myb/SANT
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source	Animal TF db
PF00249 (Myb_DNA-binding)	IPR014778	Bo4g178040	T267339_2.00	Ensembl (2018-Dec-8)	Link out
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
MYB101 M07051_2.00	Arabidopsis thaliana	NWHHNWAACCGWWHH	DDWWCGGTTWNDDWN	Dap-seq OMalley et al.(2016) MYB101_col_a	0.888	0.957
MYB101 M07052_2.00	Arabidopsis thaliana	DHHHVTAACYGWHWN	NWDWCRGTTABDDDH	Dap-seq OMalley et al.(2016) MYB101_colamp_a	0.888	0.957
Gam1 M02703_2.00	Hordeum vulgare	NVYAACSGMC	GKCSGTTRBN	SELEX Mathelier et al.(2014) MA0034.1	0.806	0.793
Gam1 M11061_2.00	Hordeum vulgare	YAACSRHM	KDYSGTTR	Transfac Matys et al.(2006) P$GAMYB_01	0.806	0.793
Q9FR42_TOBAC M11076_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$MYBAS1_01	0.805	0.848
myb.Ph3 M02704_2.00	Petunia x hybrida	WAACNGTYW	WRACNGTTW	SELEX Mathelier et al.(2014) MA0054.1	0.804	0.837
myb.Ph3 M11070_2.00	Petunia x hybrida	RTAACSGTTTYHW	WDRAAACSGTTAY	Transfac Matys et al.(2006) P$MYBPH3_01	0.804	0.837
myb.Ph3 M11071_2.00	Petunia x hybrida	STAACTAACTHHH	DDDAGTTAGTTAS	Transfac Matys et al.(2006) P$MYBPH3_02	0.804	0.837
GAM1_ORYSI M11055_2.00	Oryza sativa	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$GAMYB_Q2	0.788	0.783
MYB33 M02306_2.00	Arabidopsis thaliana	HAACNRHHNN	NNDDYNGTTD	PBM Weirauch et al.(2014) pTH8204	0.740	0.750
MYB33 M07120_2.00	Arabidopsis thaliana	NTAACYGWHWH	DWDWCRGTTAN	Dap-seq OMalley et al.(2016) MYB33_col_a	0.740	0.750
ATMYB65 M01076_2.00	Arabidopsis thaliana	HAACNRHHN	NDDYNGTTD	PBM Sullivan et al.(2014) pTH7084	0.726	0.761
ATMYB65 M07076_2.00	Arabidopsis thaliana	DHHNTAACBGHMW	WKDCVGTTANDDH	Dap-seq OMalley et al.(2016) MYB65_col200_a	0.726	0.761
ATMYB65 M07077_2.00	Arabidopsis thaliana	NTAACYGHMWHNDHN	NDHNDWKDCRGTTAN	Dap-seq OMalley et al.(2016) MYB65_colamp_a	0.726	0.761
AtMYB81 M07049_2.00	Arabidopsis thaliana	VTAACNGHWWH	DWWDCNGTTAB	Dap-seq OMalley et al.(2016) MYB81_col_a	0.663	0.750
AtMYB81 M07050_2.00	Arabidopsis thaliana	DHHNYAACBGHWWH	DWWDCVGTTRNDDH	Dap-seq OMalley et al.(2016) MYB81_colamp_a	0.663	0.750
For this family, TFs with SR scores > 0.661* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
Bo4g178040.1	Myb	15	62	KGPWTTTEDAILTEYVRKRGEGNWNAVQKNSGLLRCGKSCRLRWANHL
Bo4g178040.1	Myb	68	112	TGSFSPDEEKIIIELHAKLGNKWARMASQLPGRTDNEIKNYWNTR

Links
Other Myb/SANT family TFs
Other *Brassica oleracea* TFs

248 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
A1O5_03166	Cladophialophora psammophila	A1O5_03166	N
A1O9_10118	Exophiala aquamarina	A1O9_10118	N
HMPREF1541_00402	Cyphellophora europaea	HMPREF1541_00402	N
PV05_01512	Exophiala xenobiotica	PV05_01512	N
PV06_04553	Exophiala oligosperma	PV06_04553	N
PV07_07869	Cladophialophora immunda	PV07_07869	N
PV08_10838	Exophiala spinifera	PV08_10838	N
Z517_11856	Fonsecaea pedrosoi	Z517_11856	N
Z518_10020	Rhinocladiella mackenziei	Z518_10020	N
Z519_10016	Cladophialophora bantiana	Z519_10016	N

Bo4g178040 (Brassica oleracea) Myb/SANT

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

248 Related TFs

Bo4g178040 **(Brassica oleracea)
Myb/SANT**