CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Bra006741
(
Brassica rapa
)
Myb/SANT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00249 (Myb_DNA-binding)
IPR014778
Bra006741
T267777_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
AT5G58900
M07146_2.00
Arabidopsis thaliana
HHWWYCTTATCYWHW
WDWRGATAAGRWWDD
Dap-seq
OMalley et al.(2016)
At5g58900_col_a
0.872
0.968
AT5G58900
M07147_2.00
Arabidopsis thaliana
HWYMTTATCHWNWWH
DWWNWDGATAAKRWD
Dap-seq
OMalley et al.(2016)
At5g58900_colamp_a
0.872
0.968
PK27213.1
M01284_2.00
Cannabis sativa
NHWATCNNNN
NNNNGATWDN
PBM
Lambert et al.(2019)
pTH10196
0.750
0.849
PK27213.1
M02356_2.00
Cannabis sativa
NHHATCNNNN
NNNNGATDDN
PBM
Weirauch et al.(2014)
pTH9600
0.750
0.849
PK27693.1
M01285_2.00
Cannabis sativa
NNYTATCBNN
NNVGATARNN
PBM
Lambert et al.(2019)
pTH11302
0.681
0.828
AT5G05790
M07119_2.00
Arabidopsis thaliana
HWYMTTATCHWNWHH
DDWNWDGATAAKRWD
Dap-seq
OMalley et al.(2016)
At5g05790_col_a
0.677
0.763
For this family, TFs with SR scores >
0.661
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Bra006741.1-P
Myb
141
188
GVPWTEEEHKLFLMGLKKYGKGDWRNISRNFVITRTPTQVASHAQKYF
Links
Other
Myb/SANT
family TFs
Other
Brassica rapa
TFs
90 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Bo3g018460
Brassica oleracea
Bo3g018460
I
0.909
AT5G58900
Arabidopsis thaliana
AT5G58900
D
0.872
fgenesh2_kg.8__1829__AT5G58900.1
Arabidopsis lyrata
fgenesh2_kg.8__1829__AT5G58900.1
I
0.872
Bostr.26833s0356
Boechera stricta
Bostr.26833s0356
I
0.872
Thhalv10014270m.g
Eutrema salsugineum
Thhalv10014270m.g
I
0.870
Cagra.0891s0087
Capsella grandiflora
Cagra.0891s0087
I
0.861
Carubv10026903m.g
Capsella rubella
Carubv10026903m.g
I
0.861
Bra002610
Brassica rapa
Bra002610
I
0.848
Bo9g135730
Brassica oleracea
Bo9g135730
I
0.808
SapurV1A.0041s0720
Salix purpurea
SapurV1A.0041s0720
I
0.792
SapurV1A.0164s0380
Salix purpurea
SapurV1A.0164s0380
I
0.792
PK27213.1
Cannabis sativa
PK27213.1
D
0.750
POPTR_0001s25590
Populus trichocarpa
POPTR_0001s25590
I
0.747
mgf022442m
Mimulus guttatus
mgf022442m
I
0.745
TCM_041672
Theobroma cacao
TCM_041672
I
0.735
Lus10009884.g
Linum usitatissimum
Lus10009884.g
I
0.735
Gorai.009G093700
Gossypium raimondii
Gorai.009G093700
I
0.731
Ciclev10028910m.g
Citrus clementina
Ciclev10028910m.g
I
0.730
orange1.1g021816m.g
Citrus sinensis
orange1.1g021816m.g
I
0.730
29681.m001296
Ricinus communis
29681.m001296
I
0.729
Lus10014837.g
Linum usitatissimum
Lus10014837.g
I
0.725
cassava23356.valid.m1
Manihot esculenta
cassava23356.valid.m1
I
0.724
evm.TU.supercontig_112.58
Carica papaya
evm.TU.supercontig_112.58
I
0.718
POPTR_0009s04730
Populus trichocarpa
POPTR_0009s04730
I
0.717
GLYMA02G39000
Glycine max
GLYMA02G39000
I
0.714
GLYMA14G37050
Glycine max
GLYMA14G37050
I
0.714
Eucgr.J01940
Eucalyptus grandis
Eucgr.J01940
I
0.714
Bo2g002350
Brassica oleracea
Bo2g002350
I
0.712
Bra028892
Brassica rapa
Bra028892
I
0.712
Lus10028264.g
Linum usitatissimum
Lus10028264.g
I
0.709
Cla013553
Citrullus lanatus
Cla013553
I
0.707
Cucsa.139090
Cucumis sativus
Cucsa.139090
I
0.707
VIT_06s0004g06100
Vitis vinifera
VIT_06s0004g06100
I
0.704
MDP0000243328
Malus domestica
MDP0000243328
I
0.697
MDP0000255630
Malus domestica
MDP0000255630
I
0.697
MDP0000292581
Malus domestica
MDP0000292581
I
0.697
MTR_3g462790
Medicago truncatula
MTR_3g462790
I
0.695
Ciclev10012285m.g
Citrus clementina
Ciclev10012285m.g
I
0.695
orange1.1g021756m.g
Citrus sinensis
orange1.1g021756m.g
I
0.695
Lus10018209.g
Linum usitatissimum
Lus10018209.g
I
0.694
Lus10040696.g
Linum usitatissimum
Lus10040696.g
I
0.694
MTR_5g069710
Medicago truncatula
MTR_5g069710
I
0.693
Ca_15603
Cicer arietinum
Ca_15603
I
0.693
MDP0000221993
Malus domestica
MDP0000221993
I
0.693
Thhalv10014410m.g
Eutrema salsugineum
Thhalv10014410m.g
I
0.691
GLYMA11G22960
Glycine max
GLYMA11G22960
I
0.688
GLYMA18G07250
Glycine max
GLYMA18G07250
I
0.688
Ca_14247
Cicer arietinum
Ca_14247
I
0.682
TCM_042604
Theobroma cacao
TCM_042604
I
0.681
PK27693.1
Cannabis sativa
PK27693.1
D
0.681
cassava23290.valid.m1
Manihot esculenta
cassava23290.valid.m1
I
0.679
GLYMA01G27720
Glycine max
GLYMA01G27720
I
0.678
GLYMA03G14440
Glycine max
GLYMA03G14440
I
0.678
VIT_08s0007g01920
Vitis vinifera
VIT_08s0007g01920
I
0.678
AT5G05790
Arabidopsis thaliana
AT5G05790
D
0.677
scaffold_600551.1
Arabidopsis lyrata
scaffold_600551.1
I
0.677
Cucsa.164580
Cucumis sativus
Cucsa.164580
I
0.677
Bostr.13129s0394
Boechera stricta
Bostr.13129s0394
I
0.677
Cagra.5131s0007
Capsella grandiflora
Cagra.5131s0007
I
0.677
Carubv10001695m.g
Capsella rubella
Carubv10001695m.g
I
0.677
GLYMA07G17660
Glycine max
GLYMA07G17660
I
0.676
evm.TU.supercontig_1130.1
Carica papaya
evm.TU.supercontig_1130.1
I
0.676
Gorai.006G180900
Gossypium raimondii
Gorai.006G180900
I
0.676
MDP0000142580
Malus domestica
MDP0000142580
I
0.676
PRUPE_ppa009072mg
Prunus persica
PRUPE_ppa009072mg
I
0.674
Pm000529
Prunus mume
Pm000529
I
0.674
Pavir.J16113
Panicum virgatum
Pavir.J16113
I
0.674
Cagra.7888s0001
Capsella grandiflora
Cagra.7888s0001
N
0.673
Carubv10001741m.g
Capsella rubella
Carubv10001741m.g
N
0.673
Ca_19327
Cicer arietinum
Ca_19327
I
0.672
28288.m000014
Ricinus communis
28288.m000014
I
0.672
cassava43688.valid.m1
Manihot esculenta
cassava43688.valid.m1
I
0.672
Thhalv10014370m.g
Eutrema salsugineum
Thhalv10014370m.g
I
0.672
PGSC0003DMG400030348
Solanum tuberosum
PGSC0003DMG400030348
I
0.670
Solyc06g076770.2
Solanum lycopersicum
Solyc06g076770.2
I
0.670
gene18815-v1.0-hybrid
Fragaria vesca
gene18815-v1.0-hybrid
I
0.668
SapurV1A.0778s0020
Salix purpurea
SapurV1A.0778s0020
I
0.667
SapurV1A.3589s0010
Salix purpurea
SapurV1A.3589s0010
I
0.667
GLYMA18G42530
Glycine max
GLYMA18G42530
I
0.665
PRUPE_ppa009103mg
Prunus persica
PRUPE_ppa009103mg
I
0.665
TCM_021750
Theobroma cacao
TCM_021750
I
0.665
Pm002536
Prunus mume
Pm002536
I
0.665
Gorai.002G261600
Gossypium raimondii
Gorai.002G261600
I
0.665
cassava30173.valid.m1
Manihot esculenta
cassava30173.valid.m1
I
0.663
Gorai.012G075600
Gossypium raimondii
Gorai.012G075600
I
0.663
Bra009134
Brassica rapa
Bra009134
I
0.662
MTR_7g067080
Medicago truncatula
MTR_7g067080
I
0.661
Solyc10g076820.1
Solanum lycopersicum
Solyc10g076820.1
I
0.661
Gorai.012G112000
Gossypium raimondii
Gorai.012G112000
I
0.661
SapurV1A.0001s0790
Salix purpurea
SapurV1A.0001s0790
I
0.661