CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
Bra008764
(
Brassica rapa
)
Myb/SANT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00249 (Myb_DNA-binding)
IPR014778
Bra008764
T267804_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
AtMYB40
M07126_2.00
Arabidopsis thaliana
YYYACCWAMYHHH
DDDRKTWGGTRRR
Dap-seq
OMalley et al.(2016)
MYB40_col_a
0.889
0.978
MYB43
M07127_2.00
Arabidopsis thaliana
NYYYACCWAMYWH
DWRKTWGGTRRRN
Dap-seq
OMalley et al.(2016)
MYB43_col_a
0.683
0.750
PK21166.1
M01281_2.00
Cannabis sativa
HACCWAMY
RKTWGGTD
PBM
Lambert et al.(2019)
pTH11255
0.677
0.761
For this family, TFs with SR scores >
0.661
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Bra008764.1-P
Myb
14
61
RGPWTIEEDHRLMNFILNNGIHCWRVVPKLAGLLRCGKSCRLRWINYL
Bra008764.1-P
Myb
67
111
RGGFTDAEEDRIMELHSQLGNRWSKIASHFPGRTDNEIKNHWNTK
Links
Other
Myb/SANT
family TFs
Other
Brassica rapa
TFs
85 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Bo3g009730
Brassica oleracea
Bo3g009730
I
0.900
Bo9g166000
Brassica oleracea
Bo9g166000
I
0.900
Bra006249
Brassica rapa
Bra006249
I
0.900
AtMYB40
Arabidopsis thaliana
AT5G14340
D
0.889
Bostr.2902s0170
Boechera stricta
Bostr.2902s0170
I
0.889
Cagra.3166s0041
Capsella grandiflora
Cagra.3166s0041
I
0.889
Thhalv10014425m.g
Eutrema salsugineum
Thhalv10014425m.g
I
0.889
Bo4g101470
Brassica oleracea
Bo4g101470
I
0.836
PGSC0003DMG400011976
Solanum tuberosum
PGSC0003DMG400011976
I
0.818
GLYMA19G07830
Glycine max
GLYMA19G07830
I
0.810
Gorai.001G268000
Gossypium raimondii
Gorai.001G268000
I
0.803
GLYMA05G06410
Glycine max
GLYMA05G06410
I
0.801
GLYMA16G06900
Glycine max
GLYMA16G06900
I
0.796
Solyc05g014290.2
Solanum lycopersicum
Solyc05g014290.2
I
0.793
Eucgr.I01698
Eucalyptus grandis
Eucgr.I01698
I
0.793
Ca_19393
Cicer arietinum
Ca_19393
I
0.791
MDP0000241111
Malus domestica
MDP0000241111
I
0.783
MDP0000303239
Malus domestica
MDP0000303239
I
0.783
TCM_017051
Theobroma cacao
TCM_017051
I
0.781
Gorai.006G037500
Gossypium raimondii
Gorai.006G037500
I
0.781
cassava3745.m1
Manihot esculenta
cassava3745.m1
I
0.780
evm.TU.supercontig_1097.3
Carica papaya
evm.TU.supercontig_1097.3
I
0.780
POPTR_0001s36220
Populus trichocarpa
POPTR_0001s36220
I
0.776
Lus10032117.g
Linum usitatissimum
Lus10032117.g
I
0.773
PRUPE_ppa026877mg
Prunus persica
PRUPE_ppa026877mg
I
0.772
Pm015564
Prunus mume
Pm015564
I
0.772
cassava17364.m1
Manihot esculenta
cassava17364.m1
I
0.772
gene28021-v1.0-hybrid
Fragaria vesca
gene28021-v1.0-hybrid
I
0.772
Ciclev10017764m.g
Citrus clementina
Ciclev10017764m.g
I
0.770
Eucgr.J02279
Eucalyptus grandis
Eucgr.J02279
I
0.769
Gorai.007G074500
Gossypium raimondii
Gorai.007G074500
I
0.767
AtMYB40
Vitis vinifera
VIT_14s0219g00050
I
0.764
mgf018940m
Mimulus guttatus
mgf018940m
I
0.764
Aquca_011_00323
Aquilegia coerulea
Aquca_011_00323
I
0.759
PGSC0003DMG400012648
Solanum tuberosum
PGSC0003DMG400012648
I
0.755
Solyc02g093740.2
Solanum lycopersicum
Solyc02g093740.2
I
0.755
Lus10014569.g
Linum usitatissimum
Lus10014569.g
I
0.753
Cla004104
Citrullus lanatus
Cla004104
I
0.751
Cucsa.156340
Cucumis sativus
Cucsa.156340
I
0.751
29929.m004749
Ricinus communis
29929.m004749
I
0.750
SapurV1A.0136s0070
Salix purpurea
SapurV1A.0136s0070
I
0.750
cassava15064.m1
Manihot esculenta
cassava15064.m1
I
0.730
Aquca_011_00322
Aquilegia coerulea
Aquca_011_00322
I
0.706
GSMUA_Achr6G06800_001
Musa acuminata
GSMUA_Achr6G06800_001
I
0.701
GSMUA_Achr9G15640_001
Musa acuminata
GSMUA_Achr9G15640_001
I
0.690
PGSC0003DMG400015668
Solanum tuberosum
PGSC0003DMG400015668
I
0.689
Solyc04g014470.2
Solanum lycopersicum
Solyc04g014470.2
I
0.689
Solyc11g011050.1
Solanum lycopersicum
Solyc11g011050.1
I
0.689
mgf025004m
Mimulus guttatus
mgf025004m
I
0.687
MYB43
Arabidopsis thaliana
AT5G16600
D
0.683
MYB43
Arabidopsis lyrata
scaffold_601700.1
I
0.683
Bostr.2902s0397
Boechera stricta
Bostr.2902s0397
I
0.683
Cagra.0434s0026
Capsella grandiflora
Cagra.0434s0026
I
0.683
Carubv10001378m.g
Capsella rubella
Carubv10001378m.g
I
0.683
Bo6g099800
Brassica oleracea
Bo6g099800
I
0.680
Bra004155
Brassica rapa
Bra004155
I
0.680
Bostr.26959s0295
Boechera stricta
Bostr.26959s0295
I
0.680
Cagra.1300s0004
Capsella grandiflora
Cagra.1300s0004
I
0.680
Carubv10020766m.g
Capsella rubella
Carubv10020766m.g
I
0.680
GSMUA_AchrUn_randomG11880_001
Musa acuminata
GSMUA_AchrUn_randomG11880_001
N
0.678
GRMZM2G106558
Zea mays
GRMZM2G106558
I
0.677
GSMUA_Achr5G23110_001
Musa acuminata
GSMUA_Achr5G23110_001
I
0.677
MYB20
Arabidopsis lyrata
scaffold_201335.1
I
0.677
MYB43
Vitis vinifera
VIT_14s0006g00450
I
0.677
Cucsa.375180
Cucumis sativus
Cucsa.375180
I
0.677
gene30520-v1.0-hybrid
Fragaria vesca
gene30520-v1.0-hybrid
I
0.677
Pavir.Fb01563
Panicum virgatum
Pavir.Fb01563
I
0.677
Thhalv10019852m.g
Eutrema salsugineum
Thhalv10019852m.g
I
0.677
PK21166.1
Cannabis sativa
PK21166.1
D
0.677
AtMYB40
Populus trichocarpa
POPTR_0008s18110
I
0.673
MYB20
Arabidopsis thaliana
AT1G66230
I
0.672
Bo2g013190
Brassica oleracea
Bo2g013190
I
0.670
SapurV1A.0206s0260
Salix purpurea
SapurV1A.0206s0260
I
0.670
AMTR_s00049p00074250
Amborella trichopoda
AMTR_s00049p00074250
I
0.668
Si014144m.g
Setaria italica
Si014144m.g
I
0.668
BGIOSGA028709
Oryza indica
BGIOSGA028709
I
0.666
Bo9g163020
Brassica oleracea
Bo9g163020
I
0.666
F775_13107
Aegilops tauschii
F775_13107
I
0.666
OB08G22860
Oryza brachyantha
OB08G22860
I
0.666
OPUNC08G12780
Oryza punctata
OPUNC08G12780
I
0.666
ORGLA08G0134400
Oryza glaberrima
ORGLA08G0134400
I
0.666
Traes_5BL_D85C0EF26
Triticum aestivum
Traes_5BL_D85C0EF26
I
0.666
Traes_5DL_46D39C394
Triticum aestivum
Traes_5DL_46D39C394
I
0.666
Thhalv10014086m.g
Eutrema salsugineum
Thhalv10014086m.g
I
0.666
Lus10004042.g
Linum usitatissimum
Lus10004042.g
I
0.664