Bra012910 (Brassica rapa)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 Bra012910 T267850_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
F3A4.140
M02299_2.00 		Arabidopsis thaliana
YAACBGYY
RRCVGTTR		 PBM
Weirauch et al.(2014)
pTH7112 		0.834 0.935
F3A4.140
M07095_2.00 		Arabidopsis thaliana
TAACBGYHWHNNHNN
NNDNNDWDRCVGTTA		 Dap-seq
OMalley et al.(2016)
MYB77_col_a 		0.834 0.935
F3A4.140
M07096_2.00 		Arabidopsis thaliana
AACCGYAACCSTAWHWWAMV
BKTWWDWTASGGTTRCGGTT		 Dap-seq
OMalley et al.(2016)
MYB77_colamp_a 		0.834 0.935
F3A4.140
M02701_2.00 		Arabidopsis thaliana
SYAACYGYCVHBN
NVDBGRCRGTTRS		 SELEX
Mathelier et al.(2014)
MA0575.1 		0.834 0.935
F3A4.140
M11044_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ATMYB77_01 		0.834 0.935
MYB44
M01082_2.00 		Arabidopsis thaliana
HAACBRHHN
NDDYVGTTD		 PBM
Sullivan et al.(2014)
pTH7078 		0.812 0.892
MYB44
M07155_2.00 		Arabidopsis thaliana
HDTAACBGWHW
WDWCVGTTAHD		 Dap-seq
OMalley et al.(2016)
MYB44_colamp_a 		0.812 0.892
MYB44
M07156_2.00 		Arabidopsis thaliana
HAACBRWHWWAACBGHHWH
DWDDCVGTTWWDWYVGTTD		 Dap-seq
OMalley et al.(2016)
MYB44_col 		0.812 0.892
PK28565.1
M02357_2.00 		Cannabis sativa
TAACBGTY
RACVGTTA		 PBM
Weirauch et al.(2014)
pTH9653 		0.748 0.817
AtMYB70
M01071_2.00 		Arabidopsis thaliana
HAACBRHHN
NDDYVGTTD		 PBM
Sullivan et al.(2014)
pTH8588 		0.748 0.806
AtMYB70
M07048_2.00 		Arabidopsis thaliana
YAACBGWHWWAAMN
NKTTWWDWCVGTTR		 Dap-seq
OMalley et al.(2016)
MYB70_col_a 		0.748 0.806
MYB73
M07114_2.00 		Arabidopsis thaliana
TAACBGWHWHW
WDWDWCVGTTA		 Dap-seq
OMalley et al.(2016)
MYB73_col_a 		0.735 0.817
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra012910.1-P Myb 6 52
Bra012910.1-P Myb 58 103

Links

Other Myb/SANT family TFs
Other Brassica rapa TFs

209 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bo7g099180 Brassica oleracea Bo7g099180 I 0.909
Bostr.6864s0236 Boechera stricta Bostr.6864s0236 I 0.867
Bo8g079430 Brassica oleracea Bo8g079430 I 0.864
MYB77 Arabidopsis lyrata fgenesh2_kg.5__1356__AT3G50060.1 I 0.864
Cagra.1549s0005 Capsella grandiflora Cagra.1549s0005 I 0.864
Carubv10019440m.g Capsella rubella Carubv10019440m.g I 0.864
Thhalv10010581m.g Eutrema salsugineum Thhalv10010581m.g I 0.864
Bra036048 Brassica rapa Bra036048 I 0.841
F3A4.140 Arabidopsis thaliana AT3G50060 D 0.834
MYB44 Arabidopsis thaliana AT5G67300 D 0.812
Bo7g063830 Brassica oleracea Bo7g063830 I 0.812
Bra012149 Brassica rapa Bra012149 I 0.812
ATMYBR1 Arabidopsis lyrata scaffold_803378.1 I 0.812
Cagra.0342s0017 Capsella grandiflora Cagra.0342s0017 I 0.812
Carubv10027659m.g Capsella rubella Carubv10027659m.g I 0.812
Bostr.0568s0154 Boechera stricta Bostr.0568s0154 I 0.795
Thhalv10004676m.g Eutrema salsugineum Thhalv10004676m.g I 0.795
Bo2g167960 Brassica oleracea Bo2g167960 I 0.794
Bra029990 Brassica rapa Bra029990 I 0.790
Bo1g082480 Brassica oleracea Bo1g082480 I 0.784
AMTR_s00006p00225600 Amborella trichopoda AMTR_s00006p00225600 I 0.774
evm.TU.supercontig_6.98 Carica papaya evm.TU.supercontig_6.98 I 0.766
Gorai.005G234900 Gossypium raimondii Gorai.005G234900 I 0.766
Bostr.27895s0157 Boechera stricta Bostr.27895s0157 I 0.757
Aquca_007_00776 Aquilegia coerulea Aquca_007_00776 I 0.754
GLYMA14G09540 Glycine max GLYMA14G09540 I 0.753
Cla014191 Citrullus lanatus Cla014191 I 0.753
Cucsa.102710 Cucumis sativus Cucsa.102710 I 0.753
Bo1g004900 Brassica oleracea Bo1g004900 I 0.752
Bra011749 Brassica rapa Bra011749 I 0.752
Thhalv10000438m.g Eutrema salsugineum Thhalv10000438m.g I 0.751
mgf014089m Mimulus guttatus mgf014089m I 0.750
PGSC0003DMG400024983 Solanum tuberosum PGSC0003DMG400024983 I 0.749
Solyc02g092930.1 Solanum lycopersicum Solyc02g092930.1 I 0.749
cassava43120.valid.m1 Manihot esculenta cassava43120.valid.m1 I 0.749
Gorai.007G218100 Gossypium raimondii Gorai.007G218100 I 0.749
AtMYB70 Arabidopsis thaliana AT2G23290 D 0.748
AtMYB70 Arabidopsis lyrata fgenesh2_kg.4__260__AT2G23290.1 I 0.748
Cla022947 Citrullus lanatus Cla022947 I 0.748
Cucsa.395890 Cucumis sativus Cucsa.395890 I 0.748
PK28565.1 Cannabis sativa PK28565.1 D 0.748
SapurV1A.0597s0060 Salix purpurea SapurV1A.0597s0060 I 0.745
cassava2215.valid.m1 Manihot esculenta cassava2215.valid.m1 I 0.743
POPTR_0014s02260 Populus trichocarpa POPTR_0014s02260 I 0.742
SapurV1A.0919s0160 Salix purpurea SapurV1A.0919s0160 I 0.742
SapurV1A.1934s0020 Salix purpurea SapurV1A.1934s0020 I 0.742
TCM_000696 Theobroma cacao TCM_000696 I 0.740
29970.m000987 Ricinus communis 29970.m000987 I 0.740
Gorai.007G055600 Gossypium raimondii Gorai.007G055600 I 0.740
PGSC0003DMG400003316 Solanum tuberosum PGSC0003DMG400003316 I 0.739
Solyc04g078420.1 Solanum lycopersicum Solyc04g078420.1 I 0.739
GLYMA11G05550 Glycine max GLYMA11G05550 I 0.737
Aquca_083_00054 Aquilegia coerulea Aquca_083_00054 I 0.737
PK17282.1 Cannabis sativa PK17282.1 I 0.737
chr2.CM0250.240.nd Lotus japonicus chr2.CM0250.240.nd I 0.737
MYB73 Arabidopsis thaliana AT4G37260 D 0.735
GSMUA_Achr1G26140_001 Musa acuminata GSMUA_Achr1G26140_001 I 0.735
Bostr.7867s1585 Boechera stricta Bostr.7867s1585 I 0.735
Cagra.1232s0025 Capsella grandiflora Cagra.1232s0025 I 0.735
Carubv10007638m.g Capsella rubella Carubv10007638m.g I 0.735
SapurV1A.0339s0020 Salix purpurea SapurV1A.0339s0020 I 0.735
Thhalv10025742m.g Eutrema salsugineum Thhalv10025742m.g I 0.735
30170.m013698 Ricinus communis 30170.m013698 I 0.734
cassava47374.m1 Manihot esculenta cassava47374.m1 I 0.734
evm.TU.supercontig_21.145 Carica papaya evm.TU.supercontig_21.145 I 0.734
TCM_007138 Theobroma cacao TCM_007138 I 0.732
PRUPE_ppa008450mg Prunus persica PRUPE_ppa008450mg I 0.731
MDP0000196986 Malus domestica MDP0000196986 I 0.731
MDP0000232454 Malus domestica MDP0000232454 I 0.731
Cla020946 Citrullus lanatus Cla020946 I 0.728
Cucsa.352560 Cucumis sativus Cucsa.352560 I 0.728
Lus10010260.g Linum usitatissimum Lus10010260.g I 0.728
GSMUA_Achr4G20150_001 Musa acuminata GSMUA_Achr4G20150_001 I 0.725
PRUPE_ppa008979mg Prunus persica PRUPE_ppa008979mg I 0.725
Pm005332 Prunus mume Pm005332 I 0.725
MDP0000463846 Malus domestica MDP0000463846 I 0.725
Bo3g153550 Brassica oleracea Bo3g153550 I 0.724
Ciclev10026107m.g Citrus clementina Ciclev10026107m.g I 0.724
Gorai.009G275100 Gossypium raimondii Gorai.009G275100 I 0.724
orange1.1g021071m.g Citrus sinensis orange1.1g021071m.g I 0.724
Carubv10023692m.g Capsella rubella Carubv10023692m.g I 0.723
e_gw1.9.342.1 Physcomitrella patens e_gw1.9.342.1 I 0.721
MDP0000275800 Malus domestica MDP0000275800 I 0.721
GLYMA01G39740 Glycine max GLYMA01G39740 I 0.720
MTR_5g016510 Medicago truncatula MTR_5g016510 I 0.720
VIT_18s0001g09850 Vitis vinifera VIT_18s0001g09850 I 0.720
Ca_02182 Cicer arietinum Ca_02182 I 0.720
Cla006872 Citrullus lanatus Cla006872 I 0.720
Eucgr.F00002 Eucalyptus grandis Eucgr.F00002 I 0.720
gene00185-v1.0-hybrid Fragaria vesca gene00185-v1.0-hybrid I 0.720
Lus10030336.g Linum usitatissimum Lus10030336.g I 0.720
Gorai.010G023500 Gossypium raimondii Gorai.010G023500 I 0.719
GLYMA17G35620 Glycine max GLYMA17G35620 I 0.718
POPTR_0002s12410 Populus trichocarpa POPTR_0002s12410 I 0.718
Ciclev10001979m.g Citrus clementina Ciclev10001979m.g I 0.718
Gorai.009G215900 Gossypium raimondii Gorai.009G215900 I 0.718
orange1.1g022144m.g Citrus sinensis orange1.1g022144m.g I 0.718
SapurV1A.0167s0310 Salix purpurea SapurV1A.0167s0310 I 0.718
GSMUA_Achr3G13070_001 Musa acuminata GSMUA_Achr3G13070_001 I 0.716
Bo4g151410 Brassica oleracea Bo4g151410 I 0.714
Bra010593 Brassica rapa Bra010593 I 0.713
GLYMA04G04490 Glycine max GLYMA04G04490 I 0.713
VIT_07s0129g01050 Vitis vinifera VIT_07s0129g01050 I 0.711
GSMUA_Achr9G22600_001 Musa acuminata GSMUA_Achr9G22600_001 I 0.707
mgf002573m Mimulus guttatus mgf002573m I 0.703
gene24027-v1.0-hybrid Fragaria vesca gene24027-v1.0-hybrid I 0.702
Lus10032764.g Linum usitatissimum Lus10032764.g I 0.702
GLYMA06G04010 Glycine max GLYMA06G04010 I 0.699
Eucgr.H02226 Eucalyptus grandis Eucgr.H02226 I 0.699
GSMUA_AchrUn_randomG01280_001 Musa acuminata GSMUA_AchrUn_randomG01280_001 I 0.698
Bra017813 Brassica rapa Bra017813 I 0.696
POPTR_0009s09890 Populus trichocarpa POPTR_0009s09890 I 0.696
Cucsa.073130 Cucumis sativus Cucsa.073130 I 0.696
GLYMA05G21220 Glycine max GLYMA05G21220 I 0.695
Gorai.012G149000 Gossypium raimondii Gorai.012G149000 I 0.695
POPTR_0014s03440 Populus trichocarpa POPTR_0014s03440 I 0.694
PRUPE_ppa010735mg Prunus persica PRUPE_ppa010735mg I 0.694
Pm005220 Prunus mume Pm005220 I 0.694
cassava46434.m1 Manihot esculenta cassava46434.m1 I 0.694
evm.TU.supercontig_376.4 Carica papaya evm.TU.supercontig_376.4 I 0.694
Gorai.002G009300 Gossypium raimondii Gorai.002G009300 I 0.694
MDP0000894463 Malus domestica MDP0000894463 I 0.694
SapurV1A.0017s0390 Salix purpurea SapurV1A.0017s0390 I 0.694
GLYMA04G03910 Glycine max GLYMA04G03910 I 0.691
POPTR_0007s10490 Populus trichocarpa POPTR_0007s10490 I 0.691
Ca_01522 Cicer arietinum Ca_01522 I 0.691
Bra032176 Brassica rapa Bra032176 I 0.690
GSMUA_Achr4G09450_001 Musa acuminata GSMUA_Achr4G09450_001 I 0.690
CM0528.210.nd Lotus japonicus CM0528.210.nd I 0.690
chr5.CM0096.100.nc Lotus japonicus chr5.CM0096.100.nc I 0.688
GSMUA_Achr3G28230_001 Musa acuminata GSMUA_Achr3G28230_001 I 0.686
BRADI4G08220 Brachypodium distachyon BRADI4G08220 I 0.685
GSMUA_Achr1G09750_001 Musa acuminata GSMUA_Achr1G09750_001 I 0.685
POPTR_0005s18620 Populus trichocarpa POPTR_0005s18620 I 0.685
30170.m013927 Ricinus communis 30170.m013927 I 0.685
cassava16103.m1 Manihot esculenta cassava16103.m1 I 0.685
Ciclev10002239m.g Citrus clementina Ciclev10002239m.g I 0.685
Gorai.009G208900 Gossypium raimondii Gorai.009G208900 I 0.685
orange1.1g025351m.g Citrus sinensis orange1.1g025351m.g I 0.685
gene26289-v1.0-hybrid Fragaria vesca gene26289-v1.0-hybrid I 0.684
PK16550.1 Cannabis sativa PK16550.1 I 0.684
Bo7g118450 Brassica oleracea Bo7g118450 I 0.682
gw1.10.6.1 Physcomitrella patens gw1.10.6.1 I 0.682
GSMUA_Achr4G12950_001 Musa acuminata GSMUA_Achr4G12950_001 I 0.681
GSMUA_Achr8G25220_001 Musa acuminata GSMUA_Achr8G25220_001 I 0.681
Eucgr.E02958 Eucalyptus grandis Eucgr.E02958 I 0.681
PRUPE_ppa023154mg Prunus persica PRUPE_ppa023154mg I 0.678
Pm021211 Prunus mume Pm021211 I 0.678
MDP0000187872 Malus domestica MDP0000187872 I 0.678
MDP0000477900 Malus domestica MDP0000477900 I 0.678
MDP0000480596 Malus domestica MDP0000480596 I 0.678
MDP0000641708 Malus domestica MDP0000641708 I 0.678
MDP0000784297 Malus domestica MDP0000784297 I 0.678
MDP0000823270 Malus domestica MDP0000823270 I 0.678
GRMZM2G050550 Zea mays GRMZM2G050550 I 0.677
Eucgr.F00031 Eucalyptus grandis Eucgr.F00031 I 0.677
Eucgr.F02372 Eucalyptus grandis Eucgr.F02372 I 0.677
mgf025567m Mimulus guttatus mgf025567m I 0.676
BGIOSGA018238 Oryza indica BGIOSGA018238 I 0.675
OGLUM05G13590 Oryza glumaepatula OGLUM05G13590 I 0.675
OMERI05G11510 Oryza meridionalis OMERI05G11510 I 0.675
ONIVA05G13470 Oryza nivara ONIVA05G13470 I 0.675
OPUNC05G11020 Oryza punctata OPUNC05G11020 I 0.675
ORGLA05G0109400 Oryza glaberrima ORGLA05G0109400 I 0.675
ORUFI05G13850 Oryza rufipogon ORUFI05G13850 I 0.675
Lus10010238.g Linum usitatissimum Lus10010238.g I 0.674
Lus10021762.g Linum usitatissimum Lus10021762.g I 0.674
Aquca_009_00809 Aquilegia coerulea Aquca_009_00809 I 0.673
Gorai.009G276400 Gossypium raimondii Gorai.009G276400 I 0.672
Lus10014103.g Linum usitatissimum Lus10014103.g I 0.672
mgf020432m Mimulus guttatus mgf020432m I 0.671
SapurV1A.0708s0130 Salix purpurea SapurV1A.0708s0130 I 0.671
SELMODRAFT_103999 Selaginella moellendorffii SELMODRAFT_103999 I 0.670
SELMODRAFT_99462 Selaginella moellendorffii SELMODRAFT_99462 I 0.670
Gorai.012G078200 Gossypium raimondii Gorai.012G078200 I 0.670
MYB109 Arabidopsis thaliana AT3G55730 I 0.669
Bra007186 Brassica rapa Bra007186 I 0.669
gene09039-v1.0-hybrid Fragaria vesca gene09039-v1.0-hybrid I 0.669
cassava41257.m1 Manihot esculenta cassava41257.m1 I 0.668
mgf006151m Mimulus guttatus mgf006151m I 0.667
BGIOSGA030245 Oryza indica BGIOSGA030245 I 0.664
OB09G10200 Oryza brachyantha OB09G10200 I 0.664
OBART09G00310 Oryza barthii OBART09G00310 I 0.664
OGLUM09G00340 Oryza glumaepatula OGLUM09G00340 I 0.664
OMERI08G05160 Oryza meridionalis OMERI08G05160 I 0.664
ONIVA09G00250 Oryza nivara ONIVA09G00250 I 0.664
OPUNC12G06260 Oryza punctata OPUNC12G06260 I 0.664
ORGLA09G0002900 Oryza glaberrima ORGLA09G0002900 I 0.664
ORUFI09G00360 Oryza rufipogon ORUFI09G00360 I 0.664
OS09G0106700 Oryza sativa OS09G0106700 I 0.664
VIT_03s0180g00210 Vitis vinifera VIT_03s0180g00210 I 0.664
BGIOSGA000485 Oryza indica BGIOSGA000485 I 0.662
BGIOSGA018239 Oryza indica BGIOSGA018239 I 0.662
LPERR01G32110 Leersia perrieri LPERR01G32110 I 0.662
OB01G46120 Oryza brachyantha OB01G46120 I 0.662
OBART01G37390 Oryza barthii OBART01G37390 I 0.662
OGLUM01G41330 Oryza glumaepatula OGLUM01G41330 I 0.662
OLONG_001357 Oryza longistaminata OLONG_001357 I 0.662
OMERI01G34370 Oryza meridionalis OMERI01G34370 I 0.662
ONIVA01G42300 Oryza nivara ONIVA01G42300 I 0.662
OPUNC01G36300 Oryza punctata OPUNC01G36300 I 0.662
ORGLA01G0312200 Oryza glaberrima ORGLA01G0312200 I 0.662
ORUFI01G40770 Oryza rufipogon ORUFI01G40770 I 0.662
OS01G0850400 Oryza sativa OS01G0850400 I 0.662
POPTR_0002s13030 Populus trichocarpa POPTR_0002s13030 I 0.662
mgf023922m Mimulus guttatus mgf023922m I 0.661
Bostr.23794s0078 Boechera stricta Bostr.23794s0078 I 0.661
Cagra.10445s0001 Capsella grandiflora Cagra.10445s0001 I 0.661
Carubv10023414m.g Capsella rubella Carubv10023414m.g I 0.661