CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Bra019658
(
Brassica rapa
)
Myb/SANT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00249 (Myb_DNA-binding)
IPR014778
Bra019658
T267914_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
MYB124
M01267_2.00
Arabidopsis thaliana
NNVCGCKCBN
NVGMGCGBNN
PBM
Lambert et al.(2019)
pTH11556
0.892
0.967
MYB88
M07042_2.00
Arabidopsis thaliana
NNNHNACGCKCCDHH
DDHGGMGCGTNDNNN
Dap-seq
OMalley et al.(2016)
MYB88_col_a
0.841
0.912
MYB88
M07043_2.00
Arabidopsis thaliana
NNNACGCTCCHNN
NNDGGAGCGTNNN
Dap-seq
OMalley et al.(2016)
MYB88_colamp_a
0.841
0.912
MYB88
M11038_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MYB88_01
0.841
0.912
For this family, TFs with SR scores >
0.661
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Bra019658.1-P
Myb
25
70
VTWTPEEDVILRDQITLHGTENWAIIASKFKDKSTRQCRRRWYTYL
Bra019658.1-P
Myb
76
120
RGGWSPEEDMLLCEAQRVFGNRWTEIAKVVSGRTDNAVKNRFTTL
Links
Other
Myb/SANT
family TFs
Other
Brassica rapa
TFs
76 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Thhalv10007659m.g
Eutrema salsugineum
Thhalv10007659m.g
I
0.909
Bo5g019500
Brassica oleracea
Bo5g019500
I
0.900
MYB124
Arabidopsis thaliana
AT1G14350
D
0.892
Bostr.13671s0016
Boechera stricta
Bostr.13671s0016
I
0.876
Cagra.3501s0066
Capsella grandiflora
Cagra.3501s0066
I
0.876
Carubv10011707m.g
Capsella rubella
Carubv10011707m.g
I
0.876
TCM_011776
Theobroma cacao
TCM_011776
I
0.860
Gorai.013G083300
Gossypium raimondii
Gorai.013G083300
I
0.856
MYB88
Arabidopsis thaliana
AT2G02820
D
0.841
MYB88
Arabidopsis lyrata
fgenesh2_kg.5__181__AT2G02820.2
I
0.841
Bra024804
Brassica rapa
Bra024804
I
0.837
FLP
Arabidopsis lyrata
fgenesh2_kg.1__1561__AT1G14350.1
I
0.837
29736.m002013
Ricinus communis
29736.m002013
I
0.832
POPTR_0010s10310
Populus trichocarpa
POPTR_0010s10310
I
0.830
cassava35260.valid.m1
Manihot esculenta
cassava35260.valid.m1
I
0.830
cassava39089.m1
Manihot esculenta
cassava39089.m1
I
0.830
MDP0000165523
Malus domestica
MDP0000165523
I
0.830
SapurV1A.0062s0030
Salix purpurea
SapurV1A.0062s0030
I
0.830
Bo7g080730
Brassica oleracea
Bo7g080730
I
0.827
Thhalv10004109m.g
Eutrema salsugineum
Thhalv10004109m.g
I
0.824
evm.TU.supercontig_183.27
Carica papaya
evm.TU.supercontig_183.27
I
0.822
Gorai.005G139500
Gossypium raimondii
Gorai.005G139500
I
0.822
Bo2g136560
Brassica oleracea
Bo2g136560
I
0.816
mgf009409m
Mimulus guttatus
mgf009409m
I
0.814
GLYMA08G40950
Glycine max
GLYMA08G40950
I
0.812
Bostr.0556s0099
Boechera stricta
Bostr.0556s0099
I
0.811
GLYMA02G02310
Glycine max
GLYMA02G02310
I
0.800
MTR_5g038910
Medicago truncatula
MTR_5g038910
I
0.800
Ca_18779
Cicer arietinum
Ca_18779
I
0.800
VIT_01s0026g01910
Vitis vinifera
VIT_01s0026g01910
I
0.796
Eucgr.B03417
Eucalyptus grandis
Eucgr.B03417
I
0.795
Ciclev10031405m.g
Citrus clementina
Ciclev10031405m.g
I
0.793
orange1.1g044977m.g
Citrus sinensis
orange1.1g044977m.g
I
0.793
PRUPE_ppa017536mg
Prunus persica
PRUPE_ppa017536mg
I
0.792
Pm006532
Prunus mume
Pm006532
I
0.792
GLYMA01G05190
Glycine max
GLYMA01G05190
I
0.791
POPTR_0008s14790
Populus trichocarpa
POPTR_0008s14790
I
0.791
SapurV1A.0200s0020
Salix purpurea
SapurV1A.0200s0020
I
0.791
PK05123.1
Cannabis sativa
PK05123.1
I
0.791
Cagra.0534s0022
Capsella grandiflora
Cagra.0534s0022
I
0.790
Carubv10017119m.g
Capsella rubella
Carubv10017119m.g
I
0.790
Cla010333
Citrullus lanatus
Cla010333
I
0.786
Cucsa.285270
Cucumis sativus
Cucsa.285270
I
0.786
Lus10012847.g
Linum usitatissimum
Lus10012847.g
I
0.785
Lus10030494.g
Linum usitatissimum
Lus10030494.g
I
0.785
MDP0000210970
Malus domestica
MDP0000210970
I
0.784
MTR_8g468380
Medicago truncatula
MTR_8g468380
I
0.780
PGSC0003DMG400025612
Solanum tuberosum
PGSC0003DMG400025612
I
0.770
Solyc05g007160.2
Solanum lycopersicum
Solyc05g007160.2
I
0.770
GLYMA18G16040
Glycine max
GLYMA18G16040
I
0.752
Eucgr.G02522
Eucalyptus grandis
Eucgr.G02522
I
0.740
Aquca_002_00543
Aquilegia coerulea
Aquca_002_00543
I
0.736
GRMZM2G064630
Zea mays
GRMZM2G064630
I
0.731
Sb02g040050
Sorghum bicolor
Sb02g040050
I
0.731
PDK_20s1473891g001
Phoenix dactylifera
PDK_20s1473891g001
I
0.730
BGIOSGA026188
Oryza indica
BGIOSGA026188
I
0.722
OBART07G22930
Oryza barthii
OBART07G22930
I
0.722
OGLUM07G22980
Oryza glumaepatula
OGLUM07G22980
I
0.722
OPUNC07G21540
Oryza punctata
OPUNC07G21540
I
0.722
ORGLA07G0179200
Oryza glaberrima
ORGLA07G0179200
I
0.722
ORUFI07G24080
Oryza rufipogon
ORUFI07G24080
I
0.722
OS07G0627300
Oryza sativa
OS07G0627300
I
0.722
OB07G28520
Oryza brachyantha
OB07G28520
I
0.717
GSMUA_Achr10G18880_001
Musa acuminata
GSMUA_Achr10G18880_001
I
0.716
Si029124m.g
Setaria italica
Si029124m.g
I
0.709
AMTR_s00010p00252990
Amborella trichopoda
AMTR_s00010p00252990
I
0.700
Pavir.J36475
Panicum virgatum
Pavir.J36475
I
0.699
PGSC0003DMG400002828
Solanum tuberosum
PGSC0003DMG400002828
I
0.692
PGSC0003DMG400026758
Solanum tuberosum
PGSC0003DMG400026758
I
0.692
Solyc04g005710.1
Solanum lycopersicum
Solyc04g005710.1
I
0.692
Traes_2AS_1161E1D2E
Triticum aestivum
Traes_2AS_1161E1D2E
I
0.688
Pavir.Bb03405
Panicum virgatum
Pavir.Bb03405
I
0.679
GSMUA_Achr6G10650_001
Musa acuminata
GSMUA_Achr6G10650_001
I
0.676
LPERR07G19800
Leersia perrieri
LPERR07G19800
I
0.674
Traes_2BS_F1B450FA4
Triticum aestivum
Traes_2BS_F1B450FA4
I
0.671
Traes_2DS_9430AAD52
Triticum aestivum
Traes_2DS_9430AAD52
I
0.671