CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Bra019824
(
Brassica rapa
)
Myb/SANT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00249 (Myb_DNA-binding)
IPR014778
Bra019824
T267915_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
HRS1
M02284_2.00
Arabidopsis thaliana
AGATTCYN
NRGAATCT
PBM
Weirauch et al.(2014)
pTH7118
0.891
0.979
HRS1
M01068_2.00
Arabidopsis thaliana
NAGATTCBNN
NNVGAATCTN
PBM
Sullivan et al.(2014)
pTH7648
0.891
0.979
HRS1
M07004_2.00
Arabidopsis thaliana
NDDWWVNAAKATTCY
RGAATMTTNBWWHHN
Dap-seq
OMalley et al.(2016)
At1g13300_col_a
0.891
0.979
NIGT1
M02328_2.00
Oryza sativa
NNKATHCNNN
NNNGDATMNN
PBM
Weirauch et al.(2014)
pTH8646
0.799
0.872
EFM
M07044_2.00
Arabidopsis thaliana
NNGAATATTCY
RGAATATTCNN
Dap-seq
OMalley et al.(2016)
At2g03500_col_a
0.793
0.872
EFM
M07045_2.00
Arabidopsis thaliana
RGAATCHWAGATTC
GAATCTWDGATTCY
Dap-seq
OMalley et al.(2016)
At2g03500_colamp_a
0.793
0.872
HHO3
M02289_2.00
Arabidopsis thaliana
NWGATWCBNN
NNVGWATCWN
PBM
Weirauch et al.(2014)
pTH7278
0.791
0.872
HHO3
M07016_2.00
Arabidopsis thaliana
NNDHNNAAKATTCY
RGAATMTTNNDHNN
Dap-seq
OMalley et al.(2016)
At1g25550_colamp_a
0.791
0.872
HHO3
M07017_2.00
Arabidopsis thaliana
HNNAAKATTCY
RGAATMTTNND
Dap-seq
OMalley et al.(2016)
At1g25550_col
0.791
0.872
HHO2
M02290_2.00
Arabidopsis thaliana
NNKATHCNNN
NNNGDATMNN
PBM
Weirauch et al.(2014)
pTH7115
0.773
0.872
HHO2
M07029_2.00
Arabidopsis thaliana
AKATTCY
RGAATMT
Dap-seq
OMalley et al.(2016)
At1g68670_colamp_a
0.773
0.872
HHO2
M07030_2.00
Arabidopsis thaliana
RDATYNNAGATTC
GAATCTNNRATHY
Dap-seq
OMalley et al.(2016)
At1g68670_col
0.773
0.872
HHO6
M07024_2.00
Arabidopsis thaliana
GAATCTNNDAT
ATHNNAGATTC
Dap-seq
OMalley et al.(2016)
AT1G49560_col_a
0.751
0.830
HHO6
M07025_2.00
Arabidopsis thaliana
DGAATCTHNGATHCN
NGDATCNDAGATTCH
Dap-seq
OMalley et al.(2016)
AT1G49560_colamp_a
0.751
0.830
PK19779.1
M02354_2.00
Cannabis sativa
NNKATNCNNN
NNNGNATMNN
PBM
Weirauch et al.(2014)
pTH9610
0.750
0.872
PK14402.1
M02352_2.00
Cannabis sativa
NDWGATTCSNN
NNSGAATCWHN
PBM
Weirauch et al.(2014)
pTH9491
0.732
0.809
HHO5
M07112_2.00
Arabidopsis thaliana
HNDAAGATTCH
DGAATCTTHND
Dap-seq
OMalley et al.(2016)
AT4G37180_col_a
0.721
0.809
HHO5
M07113_2.00
Arabidopsis thaliana
NNDAAGATTCY
RGAATCTTHNN
Dap-seq
OMalley et al.(2016)
AT4G37180_colamp_a
0.721
0.809
For this family, TFs with SR scores >
0.661
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Bra019824.1-P
Myb
169
220
RRCWSSQLHRRFLNALQHLGGPHVATPKQIRELMKVDGLTNDEVKSHLQKYR
Links
Other
Myb/SANT
family TFs
Other
Brassica rapa
TFs
362 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
AMAG_01384
Allomyces macrogynus
AMAG_01384
I
AMAG_05583
Allomyces macrogynus
AMAG_05583
I
RO3G_01795
Rhizopus oryzae
RO3G_01795
I
RO3G_03272
Rhizopus oryzae
RO3G_03272
I
RO3G_05814
Rhizopus oryzae
RO3G_05814
I
RO3G_10499
Rhizopus oryzae
RO3G_10499
I
RO3G_12112
Rhizopus oryzae
RO3G_12112
I
RO3G_17136
Rhizopus oryzae
RO3G_17136
I
SPPG_01116
Spizellomyces punctatus
SPPG_01116
I
SPPG_05445
Spizellomyces punctatus
SPPG_05445
I
SPPG_07283
Spizellomyces punctatus
SPPG_07283
I
BN946_scf184851.g74
Trametes cinnabarina
BN946_scf184851.g74
I
BOTBODRAFT_102648
Botryobasidium botryosum
BOTBODRAFT_102648
I
BOTBODRAFT_110728
Botryobasidium botryosum
BOTBODRAFT_110728
I
BOTBODRAFT_87464
Botryobasidium botryosum
BOTBODRAFT_87464
I
DACRYDRAFT_21288
Dacryopinax sp
DACRYDRAFT_21288
I
DACRYDRAFT_70902
Dacryopinax sp
DACRYDRAFT_70902
I
DICSQDRAFT_139749
Dichomitus squalens
DICSQDRAFT_139749
I
DOTSEDRAFT_72541
Dothistroma septosporum
DOTSEDRAFT_72541
I
DRE_06964
Drechslerella stenobrocha
DRE_06964
I
E5Q_06685
Mixia osmundae
E5Q_06685
I
FIBRA_03155
Fibroporia radiculosa
FIBRA_03155
I
FOMPIDRAFT_1134545
Fomitopsis pinicola
FOMPIDRAFT_1134545
I
GLOINDRAFT_240353
Rhizophagus irregularis
GLOINDRAFT_240353
I
GLOTRDRAFT_35481
Gloeophyllum trabeum
GLOTRDRAFT_35481
I
HETIRDRAFT_242938
Heterobasidion irregulare
HETIRDRAFT_242938
I
J056_001839
Wallemia ichthyophaga
J056_001839
I
JAAARDRAFT_122806
Jaapia argillacea
JAAARDRAFT_122806
I
K437DRAFT_217062
Tilletiaria anomala
K437DRAFT_217062
I
K437DRAFT_224239
Tilletiaria anomala
K437DRAFT_224239
I
K443DRAFT_90832
Laccaria amethystina
K443DRAFT_90832
I
LACBIDRAFT_150048
Laccaria bicolor
LACBIDRAFT_150048
I
M407DRAFT_35594
Tulasnella calospora
M407DRAFT_35594
I
M407DRAFT_66111
Tulasnella calospora
M407DRAFT_66111
I
MELLADRAFT_42736
Melampsora laricipopulina
MELLADRAFT_42736
I
PaG_01262
Pseudozyma aphidis
PaG_01262
I
PaG_03584
Pseudozyma aphidis
PaG_03584
I
PAN0_017c5548
Pseudozyma antarctica
PAN0_017c5548
I
PAS_chr2-1_0026
Komagataella pastoris
PAS_chr2-1_0026
I
PAXRUDRAFT_162335
Paxillus rubicundulus
PAXRUDRAFT_162335
I
PFL1_05375
Pseudozyma flocculosa
PFL1_05375
I
PFL1_06413
Pseudozyma flocculosa
PFL1_06413
I
PGTG_00887
Puccinia graminis
PGTG_00887
I
PGTG_02256
Puccinia graminis
PGTG_02256
I
PGTG_06588
Puccinia graminis
PGTG_06588
I
PHACADRAFT_264175
Phanerochaete carnosa
PHACADRAFT_264175
I
PHSY_005227
Pseudozyma hubeiensis
PHSY_005227
I
PHSY_005564
Pseudozyma hubeiensis
PHSY_005564
I
PIIN_04679
Piriformospora indica
PIIN_04679
I
PILCRDRAFT_816387
Piloderma croceum
PILCRDRAFT_816387
I
PLEOSDRAFT_1046174
Pleurotus ostreatus
PLEOSDRAFT_1046174
I
PNEG_02594
Pneumocystis murina
PNEG_02594
I
POSPLDRAFT_96258
Postia placenta
POSPLDRAFT_96258
I
PSEUBRA_SCAF21g03367
Pseudozyma brasiliensis
PSEUBRA_SCAF21g03367
I
PSEUBRA_SCAF6g00904
Pseudozyma brasiliensis
PSEUBRA_SCAF6g00904
I
RHTO_01429
Rhodosporidium toruloides
RHTO_01429
I
RHTO_06861
Rhodosporidium toruloides
RHTO_06861
I
RTG_02995
Rhodotorula glutinis
RTG_02995
I
SCHCODRAFT_269941
Schizophyllum commune
SCHCODRAFT_269941
I
SCLCIDRAFT_106370
Scleroderma citrinum
SCLCIDRAFT_106370
I
SCLCIDRAFT_1218516
Scleroderma citrinum
SCLCIDRAFT_1218516
I
SEPMUDRAFT_126550
Sphaerulina musiva
SEPMUDRAFT_126550
I
SERLA73DRAFT_60481
Serpula lacrymans
SERLA73DRAFT_60481
I
SOCG_00564
Schizosaccharomyces octosporus
SOCG_00564
I
hsf1
Schizosaccharomyces pombe
SPAC2E12.02
I
SPOG_01941
Schizosaccharomyces cryophilus
SPOG_01941
I
sr10015
Sporisorium reilianum
sr10015
I
sr14110
Sporisorium reilianum
sr14110
I
UHOR_04781
Ustilago hordei
UHOR_04781
I
UHOR_08093
Ustilago hordei
UHOR_08093
I
UM03053
Ustilago maydis
UM03053
I
UM05274
Ustilago maydis
UM05274
I
V565_116890
Rhizoctonia solani
V565_116890
I
e_gw1.1.2474.1
Mucor circinelloides
e_gw1.1.2474.1
I
e_gw1.6.1274.1
Mucor circinelloides
e_gw1.6.1274.1
I
estExt_Genewise1.C_20646
Mucor circinelloides
estExt_Genewise1.C_20646
I
fgenesh1_pg.C_scaffold_3000687
Phanerochaete chrysosporium
fgenesh1_pg.C_scaffold_3000687
I
fgeneshPB_pg.46__69
Phycomyces blakesleeanus
fgeneshPB_pg.46__69
I
gw1.1.2475.1
Mucor circinelloides
gw1.1.2475.1
I
gw1.3.1948.1
Mucor circinelloides
gw1.3.1948.1
I
PredSwiss_ASS2010_3259.1
Pneumocystis carinii
PredSwiss_ASS2010_3259.1
I
PredSwiss_CON2839.2
Pneumocystis carinii
PredSwiss_CON2839.2
I
PredSwiss_EST948.1
Pneumocystis carinii
PredSwiss_EST948.1
I
EDP41992.1
Malassezia globosa
EDP41992.1
I
gw1.2.1743.1
Heterobasidion annosum
gw1.2.1743.1
I
XP_002490906.1
Pichia pastoris
XP_002490906.1
I
RO3G_03231
Rhizopus oryzae
RO3G_03231
N
RO3G_15483
Rhizopus oryzae
RO3G_15483
N
SPPG_03494
Spizellomyces punctatus
SPPG_03494
N
SPRG_00136
Saprolegnia parasitica
SPRG_00136
N
SPRG_00586
Saprolegnia parasitica
SPRG_00586
N
AGABI2DRAFT_70614
Agaricus bisporus
AGABI2DRAFT_70614
N
CERSUDRAFT_48013
Ceriporiopsis subvermispora
CERSUDRAFT_48013
N
CY34DRAFT_22472
Suillus luteus
CY34DRAFT_22472
N
CY34DRAFT_62325
Suillus luteus
CY34DRAFT_62325
N
GALMADRAFT_60919
Galerina marginata
GALMADRAFT_60919
N
GLOINDRAFT_71916
Rhizophagus irregularis
GLOINDRAFT_71916
N
GLOTRDRAFT_39410
Gloeophyllum trabeum
GLOTRDRAFT_39410
N
GSPATT00036105001
Paramecium tetraurelia
GSPATT00036105001
N
GYMLUDRAFT_144307
Gymnopus luxurians
GYMLUDRAFT_144307
N
H072_3239
Dactylellina haptotyla
H072_3239
N
HETIRDRAFT_244333
Heterobasidion irregulare
HETIRDRAFT_244333
N
M378DRAFT_184361
Amanita muscaria
M378DRAFT_184361
N
M404DRAFT_161564
Pisolithus tinctorius
M404DRAFT_161564
N
M404DRAFT_484428
Pisolithus tinctorius
M404DRAFT_484428
N
M408DRAFT_38378
Serendipita vermifera
M408DRAFT_38378
N
M413DRAFT_74768
Hebeloma cylindrosporum
M413DRAFT_74768
N
MELLADRAFT_31826
Melampsora laricipopulina
MELLADRAFT_31826
N
Moror_17043
Moniliophthora roreri
Moror_17043
N
PAXINDRAFT_87057
Paxillus involutus
PAXINDRAFT_87057
N
PAXRUDRAFT_149609
Paxillus rubicundulus
PAXRUDRAFT_149609
N
PFL1_03124
Pseudozyma flocculosa
PFL1_03124
N
PHSY_000528
Pseudozyma hubeiensis
PHSY_000528
N
PILCRDRAFT_30307
Piloderma croceum
PILCRDRAFT_30307
N
PISMIDRAFT_648350
Pisolithus microcarpus
PISMIDRAFT_648350
N
PLEOSDRAFT_1043224
Pleurotus ostreatus
PLEOSDRAFT_1043224
N
PSEUBRA_SCAF16g05334
Pseudozyma brasiliensis
PSEUBRA_SCAF16g05334
N
PTTG_04989
Puccinia triticina
PTTG_04989
N
SERLA73DRAFT_66913
Serpula lacrymans
SERLA73DRAFT_66913
N
sr13089
Sporisorium reilianum
sr13089
N
UHOR_03142
Ustilago hordei
UHOR_03142
N
UM05182
Ustilago maydis
UM05182
N
V565_035120
Rhizoctonia solani
V565_035120
N
WALSEDRAFT_18221
Wallemia sebi
WALSEDRAFT_18221
N
e_gw.355.83.1
Branchiostoma floridae
e_gw.355.83.1
N
e_gw.355.85.1
Branchiostoma floridae
e_gw.355.85.1
N
estExt_Genewise1.C_280011
Phycomyces blakesleeanus
estExt_Genewise1.C_280011
N
estExt_Genewise1Plus.C_12171
Mucor circinelloides
estExt_Genewise1Plus.C_12171
N
fgeneshPB_pg.4__372
Phycomyces blakesleeanus
fgeneshPB_pg.4__372
N
fgeneshPB_pg.8__251
Phycomyces blakesleeanus
fgeneshPB_pg.8__251
N
gw1.5.1361.1
Mucor circinelloides
gw1.5.1361.1
N
gw1.8.770.1
Mucor circinelloides
gw1.8.770.1
N
gw1.8.772.1
Mucor circinelloides
gw1.8.772.1
N
EFA82978.1
Polysphondylium pallidum
EFA82978.1
N