Bra019824 (Brassica rapa)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 Bra019824 T267915_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
HRS1
M02284_2.00
Arabidopsis thaliana
AGATTCYN

NRGAATCT
PBM
Weirauch et al.(2014)
pTH7118
0.891 0.979
HRS1
M01068_2.00
Arabidopsis thaliana
NAGATTCBNN

NNVGAATCTN
PBM
Sullivan et al.(2014)
pTH7648
0.891 0.979
HRS1
M07004_2.00
Arabidopsis thaliana
NDDWWVNAAKATTCY

RGAATMTTNBWWHHN
Dap-seq
OMalley et al.(2016)
At1g13300_col_a
0.891 0.979
NIGT1
M02328_2.00
Oryza sativa
NNKATHCNNN

NNNGDATMNN
PBM
Weirauch et al.(2014)
pTH8646
0.799 0.872
EFM
M07044_2.00
Arabidopsis thaliana
NNGAATATTCY

RGAATATTCNN
Dap-seq
OMalley et al.(2016)
At2g03500_col_a
0.793 0.872
EFM
M07045_2.00
Arabidopsis thaliana
RGAATCHWAGATTC

GAATCTWDGATTCY
Dap-seq
OMalley et al.(2016)
At2g03500_colamp_a
0.793 0.872
HHO3
M02289_2.00
Arabidopsis thaliana
NWGATWCBNN

NNVGWATCWN
PBM
Weirauch et al.(2014)
pTH7278
0.791 0.872
HHO3
M07016_2.00
Arabidopsis thaliana
NNDHNNAAKATTCY

RGAATMTTNNDHNN
Dap-seq
OMalley et al.(2016)
At1g25550_colamp_a
0.791 0.872
HHO3
M07017_2.00
Arabidopsis thaliana
HNNAAKATTCY

RGAATMTTNND
Dap-seq
OMalley et al.(2016)
At1g25550_col
0.791 0.872
HHO2
M02290_2.00
Arabidopsis thaliana
NNKATHCNNN

NNNGDATMNN
PBM
Weirauch et al.(2014)
pTH7115
0.773 0.872
HHO2
M07029_2.00
Arabidopsis thaliana
AKATTCY

RGAATMT
Dap-seq
OMalley et al.(2016)
At1g68670_colamp_a
0.773 0.872
HHO2
M07030_2.00
Arabidopsis thaliana
RDATYNNAGATTC

GAATCTNNRATHY
Dap-seq
OMalley et al.(2016)
At1g68670_col
0.773 0.872
HHO6
M07024_2.00
Arabidopsis thaliana
GAATCTNNDAT

ATHNNAGATTC
Dap-seq
OMalley et al.(2016)
AT1G49560_col_a
0.751 0.830
HHO6
M07025_2.00
Arabidopsis thaliana
DGAATCTHNGATHCN

NGDATCNDAGATTCH
Dap-seq
OMalley et al.(2016)
AT1G49560_colamp_a
0.751 0.830
PK19779.1
M02354_2.00
Cannabis sativa
NNKATNCNNN

NNNGNATMNN
PBM
Weirauch et al.(2014)
pTH9610
0.750 0.872
PK14402.1
M02352_2.00
Cannabis sativa
NDWGATTCSNN

NNSGAATCWHN
PBM
Weirauch et al.(2014)
pTH9491
0.732 0.809
HHO5
M07112_2.00
Arabidopsis thaliana
HNDAAGATTCH

DGAATCTTHND
Dap-seq
OMalley et al.(2016)
AT4G37180_col_a
0.721 0.809
HHO5
M07113_2.00
Arabidopsis thaliana
NNDAAGATTCY

RGAATCTTHNN
Dap-seq
OMalley et al.(2016)
AT4G37180_colamp_a
0.721 0.809
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra019824.1-P Myb 169 220

Links

Other Myb/SANT family TFs
Other Brassica rapa TFs

362 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
AMAG_01384 Allomyces macrogynus AMAG_01384 I
AMAG_05583 Allomyces macrogynus AMAG_05583 I
RO3G_01795 Rhizopus oryzae RO3G_01795 I
RO3G_03272 Rhizopus oryzae RO3G_03272 I
RO3G_05814 Rhizopus oryzae RO3G_05814 I
RO3G_10499 Rhizopus oryzae RO3G_10499 I
RO3G_12112 Rhizopus oryzae RO3G_12112 I
RO3G_17136 Rhizopus oryzae RO3G_17136 I
SPPG_01116 Spizellomyces punctatus SPPG_01116 I
SPPG_05445 Spizellomyces punctatus SPPG_05445 I
SPPG_07283 Spizellomyces punctatus SPPG_07283 I
BN946_scf184851.g74 Trametes cinnabarina BN946_scf184851.g74 I
BOTBODRAFT_102648 Botryobasidium botryosum BOTBODRAFT_102648 I
BOTBODRAFT_110728 Botryobasidium botryosum BOTBODRAFT_110728 I
BOTBODRAFT_87464 Botryobasidium botryosum BOTBODRAFT_87464 I
DACRYDRAFT_21288 Dacryopinax sp DACRYDRAFT_21288 I
DACRYDRAFT_70902 Dacryopinax sp DACRYDRAFT_70902 I
DICSQDRAFT_139749 Dichomitus squalens DICSQDRAFT_139749 I
DOTSEDRAFT_72541 Dothistroma septosporum DOTSEDRAFT_72541 I
DRE_06964 Drechslerella stenobrocha DRE_06964 I
E5Q_06685 Mixia osmundae E5Q_06685 I
FIBRA_03155 Fibroporia radiculosa FIBRA_03155 I
FOMPIDRAFT_1134545 Fomitopsis pinicola FOMPIDRAFT_1134545 I
GLOINDRAFT_240353 Rhizophagus irregularis GLOINDRAFT_240353 I
GLOTRDRAFT_35481 Gloeophyllum trabeum GLOTRDRAFT_35481 I
HETIRDRAFT_242938 Heterobasidion irregulare HETIRDRAFT_242938 I
J056_001839 Wallemia ichthyophaga J056_001839 I
JAAARDRAFT_122806 Jaapia argillacea JAAARDRAFT_122806 I
K437DRAFT_217062 Tilletiaria anomala K437DRAFT_217062 I
K437DRAFT_224239 Tilletiaria anomala K437DRAFT_224239 I
K443DRAFT_90832 Laccaria amethystina K443DRAFT_90832 I
LACBIDRAFT_150048 Laccaria bicolor LACBIDRAFT_150048 I
M407DRAFT_35594 Tulasnella calospora M407DRAFT_35594 I
M407DRAFT_66111 Tulasnella calospora M407DRAFT_66111 I
MELLADRAFT_42736 Melampsora laricipopulina MELLADRAFT_42736 I
PaG_01262 Pseudozyma aphidis PaG_01262 I
PaG_03584 Pseudozyma aphidis PaG_03584 I
PAN0_017c5548 Pseudozyma antarctica PAN0_017c5548 I
PAS_chr2-1_0026 Komagataella pastoris PAS_chr2-1_0026 I
PAXRUDRAFT_162335 Paxillus rubicundulus PAXRUDRAFT_162335 I
PFL1_05375 Pseudozyma flocculosa PFL1_05375 I
PFL1_06413 Pseudozyma flocculosa PFL1_06413 I
PGTG_00887 Puccinia graminis PGTG_00887 I
PGTG_02256 Puccinia graminis PGTG_02256 I
PGTG_06588 Puccinia graminis PGTG_06588 I
PHACADRAFT_264175 Phanerochaete carnosa PHACADRAFT_264175 I
PHSY_005227 Pseudozyma hubeiensis PHSY_005227 I
PHSY_005564 Pseudozyma hubeiensis PHSY_005564 I
PIIN_04679 Piriformospora indica PIIN_04679 I
PILCRDRAFT_816387 Piloderma croceum PILCRDRAFT_816387 I
PLEOSDRAFT_1046174 Pleurotus ostreatus PLEOSDRAFT_1046174 I
PNEG_02594 Pneumocystis murina PNEG_02594 I
POSPLDRAFT_96258 Postia placenta POSPLDRAFT_96258 I
PSEUBRA_SCAF21g03367 Pseudozyma brasiliensis PSEUBRA_SCAF21g03367 I
PSEUBRA_SCAF6g00904 Pseudozyma brasiliensis PSEUBRA_SCAF6g00904 I
RHTO_01429 Rhodosporidium toruloides RHTO_01429 I
RHTO_06861 Rhodosporidium toruloides RHTO_06861 I
RTG_02995 Rhodotorula glutinis RTG_02995 I
SCHCODRAFT_269941 Schizophyllum commune SCHCODRAFT_269941 I
SCLCIDRAFT_106370 Scleroderma citrinum SCLCIDRAFT_106370 I
SCLCIDRAFT_1218516 Scleroderma citrinum SCLCIDRAFT_1218516 I
SEPMUDRAFT_126550 Sphaerulina musiva SEPMUDRAFT_126550 I
SERLA73DRAFT_60481 Serpula lacrymans SERLA73DRAFT_60481 I
SOCG_00564 Schizosaccharomyces octosporus SOCG_00564 I
hsf1 Schizosaccharomyces pombe SPAC2E12.02 I
SPOG_01941 Schizosaccharomyces cryophilus SPOG_01941 I
sr10015 Sporisorium reilianum sr10015 I
sr14110 Sporisorium reilianum sr14110 I
UHOR_04781 Ustilago hordei UHOR_04781 I
UHOR_08093 Ustilago hordei UHOR_08093 I
UM03053 Ustilago maydis UM03053 I
UM05274 Ustilago maydis UM05274 I
V565_116890 Rhizoctonia solani V565_116890 I
e_gw1.1.2474.1 Mucor circinelloides e_gw1.1.2474.1 I
e_gw1.6.1274.1 Mucor circinelloides e_gw1.6.1274.1 I
estExt_Genewise1.C_20646 Mucor circinelloides estExt_Genewise1.C_20646 I
fgenesh1_pg.C_scaffold_3000687 Phanerochaete chrysosporium fgenesh1_pg.C_scaffold_3000687 I
fgeneshPB_pg.46__69 Phycomyces blakesleeanus fgeneshPB_pg.46__69 I
gw1.1.2475.1 Mucor circinelloides gw1.1.2475.1 I
gw1.3.1948.1 Mucor circinelloides gw1.3.1948.1 I
PredSwiss_ASS2010_3259.1 Pneumocystis carinii PredSwiss_ASS2010_3259.1 I
PredSwiss_CON2839.2 Pneumocystis carinii PredSwiss_CON2839.2 I
PredSwiss_EST948.1 Pneumocystis carinii PredSwiss_EST948.1 I
EDP41992.1 Malassezia globosa EDP41992.1 I
gw1.2.1743.1 Heterobasidion annosum gw1.2.1743.1 I
XP_002490906.1 Pichia pastoris XP_002490906.1 I
RO3G_03231 Rhizopus oryzae RO3G_03231 N
RO3G_15483 Rhizopus oryzae RO3G_15483 N
SPPG_03494 Spizellomyces punctatus SPPG_03494 N
SPRG_00136 Saprolegnia parasitica SPRG_00136 N
SPRG_00586 Saprolegnia parasitica SPRG_00586 N
AGABI2DRAFT_70614 Agaricus bisporus AGABI2DRAFT_70614 N
CERSUDRAFT_48013 Ceriporiopsis subvermispora CERSUDRAFT_48013 N
CY34DRAFT_22472 Suillus luteus CY34DRAFT_22472 N
CY34DRAFT_62325 Suillus luteus CY34DRAFT_62325 N
GALMADRAFT_60919 Galerina marginata GALMADRAFT_60919 N
GLOINDRAFT_71916 Rhizophagus irregularis GLOINDRAFT_71916 N
GLOTRDRAFT_39410 Gloeophyllum trabeum GLOTRDRAFT_39410 N
GSPATT00036105001 Paramecium tetraurelia GSPATT00036105001 N
GYMLUDRAFT_144307 Gymnopus luxurians GYMLUDRAFT_144307 N
H072_3239 Dactylellina haptotyla H072_3239 N
HETIRDRAFT_244333 Heterobasidion irregulare HETIRDRAFT_244333 N
M378DRAFT_184361 Amanita muscaria M378DRAFT_184361 N
M404DRAFT_161564 Pisolithus tinctorius M404DRAFT_161564 N
M404DRAFT_484428 Pisolithus tinctorius M404DRAFT_484428 N
M408DRAFT_38378 Serendipita vermifera M408DRAFT_38378 N
M413DRAFT_74768 Hebeloma cylindrosporum M413DRAFT_74768 N
MELLADRAFT_31826 Melampsora laricipopulina MELLADRAFT_31826 N
Moror_17043 Moniliophthora roreri Moror_17043 N
PAXINDRAFT_87057 Paxillus involutus PAXINDRAFT_87057 N
PAXRUDRAFT_149609 Paxillus rubicundulus PAXRUDRAFT_149609 N
PFL1_03124 Pseudozyma flocculosa PFL1_03124 N
PHSY_000528 Pseudozyma hubeiensis PHSY_000528 N
PILCRDRAFT_30307 Piloderma croceum PILCRDRAFT_30307 N
PISMIDRAFT_648350 Pisolithus microcarpus PISMIDRAFT_648350 N
PLEOSDRAFT_1043224 Pleurotus ostreatus PLEOSDRAFT_1043224 N
PSEUBRA_SCAF16g05334 Pseudozyma brasiliensis PSEUBRA_SCAF16g05334 N
PTTG_04989 Puccinia triticina PTTG_04989 N
SERLA73DRAFT_66913 Serpula lacrymans SERLA73DRAFT_66913 N
sr13089 Sporisorium reilianum sr13089 N
UHOR_03142 Ustilago hordei UHOR_03142 N
UM05182 Ustilago maydis UM05182 N
V565_035120 Rhizoctonia solani V565_035120 N
WALSEDRAFT_18221 Wallemia sebi WALSEDRAFT_18221 N
e_gw.355.83.1 Branchiostoma floridae e_gw.355.83.1 N
e_gw.355.85.1 Branchiostoma floridae e_gw.355.85.1 N
estExt_Genewise1.C_280011 Phycomyces blakesleeanus estExt_Genewise1.C_280011 N
estExt_Genewise1Plus.C_12171 Mucor circinelloides estExt_Genewise1Plus.C_12171 N
fgeneshPB_pg.4__372 Phycomyces blakesleeanus fgeneshPB_pg.4__372 N
fgeneshPB_pg.8__251 Phycomyces blakesleeanus fgeneshPB_pg.8__251 N
gw1.5.1361.1 Mucor circinelloides gw1.5.1361.1 N
gw1.8.770.1 Mucor circinelloides gw1.8.770.1 N
gw1.8.772.1 Mucor circinelloides gw1.8.772.1 N
EFA82978.1 Polysphondylium pallidum EFA82978.1 N