Bra023486 (Brassica rapa)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 Bra023486 T267955_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
WER
M11047_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$WEREWOLF_Q2_01 		0.811 0.988
WER
M11048_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$WEREWOLF_Q2 		0.811 0.988
MYB23
M07133_2.00 		Arabidopsis thaliana
HCAACWAHHHH
DDDDTWGTTGD		 Dap-seq
OMalley et al.(2016)
MYB23_col_a 		0.720 0.940
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra023486.1-P Myb 18 55
Bra023486.1-P Myb 61 106

Links

Other Myb/SANT family TFs
Other Brassica rapa TFs

50 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
WER Arabidopsis thaliana AT5G14750 D 0.811
Bo2g012170 Brassica oleracea Bo2g012170 I 0.811
WER Arabidopsis lyrata fgenesh2_kg.6__1454__AT5G14750.1 I 0.811
Bostr.2902s0211 Boechera stricta Bostr.2902s0211 I 0.811
Cagra.3166s0078 Capsella grandiflora Cagra.3166s0078 I 0.811
Carubv10001990m.g Capsella rubella Carubv10001990m.g I 0.811
Thhalv10014715m.g Eutrema salsugineum Thhalv10014715m.g I 0.811
Bo9g165670 Brassica oleracea Bo9g165670 I 0.794
Bra008740 Brassica rapa Bra008740 I 0.794
Ciclev10017556m.g Citrus clementina Ciclev10017556m.g I 0.777
Bostr.1460s0063 Boechera stricta Bostr.1460s0063 I 0.773
Eucgr.J02212 Eucalyptus grandis Eucgr.J02212 I 0.770
Thhalv10005428m.g Eutrema salsugineum Thhalv10005428m.g I 0.760
cassava26193.m1 Manihot esculenta cassava26193.m1 I 0.754
Pm024725 Prunus mume Pm024725 I 0.750
Bra025311 Brassica rapa Bra025311 I 0.745
MDP0000578193 Malus domestica MDP0000578193 I 0.740
TCM_012057 Theobroma cacao TCM_012057 I 0.739
Bo7g090950 Brassica oleracea Bo7g090950 I 0.734
PRUPE_ppa010908mg Prunus persica PRUPE_ppa010908mg I 0.734
SapurV1A.1178s0050 Salix purpurea SapurV1A.1178s0050 I 0.732
TCM_016886 Theobroma cacao TCM_016886 I 0.731
VIT_17s0000g08480 Vitis vinifera VIT_17s0000g08480 I 0.723
MDP0000650225 Malus domestica MDP0000650225 I 0.723
Aquca_025_00333 Aquilegia coerulea Aquca_025_00333 I 0.721
MYB23 Arabidopsis thaliana AT5G40330 D 0.720
Bra025589 Brassica rapa Bra025589 I 0.720
cassava27350.m1 Manihot esculenta cassava27350.m1 I 0.720
Bostr.7200s0005 Boechera stricta Bostr.7200s0005 I 0.720
Cagra.3160s0003 Capsella grandiflora Cagra.3160s0003 I 0.720
Carubv10005698m.g Capsella rubella Carubv10005698m.g I 0.720
GL1 Arabidopsis thaliana AT3G27920 I 0.717
GL1 Arabidopsis lyrata fgenesh1_pg.C_scaffold_5000559 I 0.717
evm.TU.supercontig_124.57 Carica papaya evm.TU.supercontig_124.57 I 0.713
VIT_14s0066g01220 Vitis vinifera VIT_14s0066g01220 I 0.710
POPTR_0012s08190 Populus trichocarpa POPTR_0012s08190 I 0.709
POPTR_0015s08700 Populus trichocarpa POPTR_0015s08700 I 0.707
Aquca_002_00170 Aquilegia coerulea Aquca_002_00170 I 0.707
Eucgr.B00373 Eucalyptus grandis Eucgr.B00373 I 0.706
Gorai.007G001800 Gossypium raimondii Gorai.007G001800 I 0.705
SapurV1A.1404s0020 Salix purpurea SapurV1A.1404s0020 I 0.704
Thhalv10028340m.g Eutrema salsugineum Thhalv10028340m.g I 0.704
Cagra.4961s0006 Capsella grandiflora Cagra.4961s0006 I 0.701
Carubv10018791m.g Capsella rubella Carubv10018791m.g I 0.701
Eucgr.I01791 Eucalyptus grandis Eucgr.I01791 I 0.698
POPTR_0015s08680 Populus trichocarpa POPTR_0015s08680 I 0.697
Gorai.012G061800 Gossypium raimondii Gorai.012G061800 I 0.697
Bostr.0556s0467 Boechera stricta Bostr.0556s0467 I 0.677
Bra039065 Brassica rapa Bra039065 I 0.674
TCM_010360 Theobroma cacao TCM_010360 I 0.662