CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Bra029311
(
Brassica rapa
)
Myb/SANT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00249 (Myb_DNA-binding)
IPR014778
Bra029311
T268033_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
MYB51
M07010_2.00
Arabidopsis thaliana
NHNHHNHNNNYYYACCWACYW
WRGTWGGTRRRNNNDNDDNDN
Dap-seq
OMalley et al.(2016)
MYB51_col_a
0.694
0.753
For this family, TFs with SR scores >
0.661
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Bra029311.1-P
Myb
14
61
KGAWTTEEDKTLISYIHEHGEGGWRDIPQKAGLKRCGKSCRLRWTNYL
Bra029311.1-P
Myb
67
112
RGEFSSEEEQIIIMLHAARGNKWSVIARHLPRRTDNEIKNYWNTHL
Links
Other
Myb/SANT
family TFs
Other
Brassica rapa
TFs
74 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Bo2g161590
Brassica oleracea
Bo2g161590
I
0.867
Bo9g014610
Brassica oleracea
Bo9g014610
I
0.854
Bra035929
Brassica rapa
Bra035929
I
0.854
Thhalv10004407m.g
Eutrema salsugineum
Thhalv10004407m.g
I
0.854
Bo7g098590
Brassica oleracea
Bo7g098590
I
0.844
Bra012961
Brassica rapa
Bra012961
I
0.844
MYB28
Arabidopsis thaliana
AT5G61420
I
0.824
MYB28
Arabidopsis lyrata
scaffold_802785.1
I
0.824
Bostr.26833s0098
Boechera stricta
Bostr.26833s0098
I
0.824
Cagra.0542s0036
Capsella grandiflora
Cagra.0542s0036
I
0.824
Carubv10027861m.g
Capsella rubella
Carubv10027861m.g
I
0.824
Cagra.2925s0017
Capsella grandiflora
Cagra.2925s0017
I
0.820
Carubv10001328m.g
Capsella rubella
Carubv10001328m.g
I
0.820
Bo9g175680
Brassica oleracea
Bo9g175680
I
0.810
MYB29
Arabidopsis thaliana
AT5G07690
I
0.803
Bostr.13129s0197
Boechera stricta
Bostr.13129s0197
I
0.803
Thhalv10013952m.g
Eutrema salsugineum
Thhalv10013952m.g
I
0.803
Bra005949
Brassica rapa
Bra005949
I
0.789
MYB29
Arabidopsis lyrata
fgenesh2_kg.6__738__AT5G07690.1
I
0.788
MYB76
Arabidopsis thaliana
AT5G07700
I
0.787
Bo3g004500
Brassica oleracea
Bo3g004500
I
0.780
MYB76
Arabidopsis lyrata
Al_scaffold_0006_698
I
0.770
cassava44039.valid.m1
Manihot esculenta
cassava44039.valid.m1
I
0.764
cassava46146.m1
Manihot esculenta
cassava46146.m1
I
0.756
cassava47112.m1
Manihot esculenta
cassava47112.m1
I
0.756
Lus10019085.g
Linum usitatissimum
Lus10019085.g
I
0.749
PK27708.1
Cannabis sativa
PK27708.1
I
0.725
evm.TU.supercontig_3.239
Carica papaya
evm.TU.supercontig_3.239
I
0.724
TCM_014091
Theobroma cacao
TCM_014091
I
0.716
cassava46145.m1
Manihot esculenta
cassava46145.m1
I
0.712
Bostr.13129s0196
Boechera stricta
Bostr.13129s0196
I
0.707
ATMYB122
Arabidopsis lyrata
fgenesh2_kg.2__1680__AT1G74080.1
I
0.700
PK01174.1
Cannabis sativa
PK01174.1
I
0.698
Bo5g025570
Brassica oleracea
Bo5g025570
I
0.697
Bra025666
Brassica rapa
Bra025666
I
0.697
Thhalv10008152m.g
Eutrema salsugineum
Thhalv10008152m.g
I
0.697
MYB122
Arabidopsis thaliana
AT1G74080
I
0.696
Bo6g118350
Brassica oleracea
Bo6g118350
I
0.695
Bra015939
Brassica rapa
Bra015939
I
0.695
MYB51
Arabidopsis thaliana
AT1G18570
D
0.694
MYB51
Arabidopsis lyrata
fgenesh2_kg.1__2031__AT1G18570.1
I
0.694
Bostr.7128s0464
Boechera stricta
Bostr.7128s0464
I
0.694
Cagra.4153s0023
Capsella grandiflora
Cagra.4153s0023
I
0.694
Carubv10009563m.g
Capsella rubella
Carubv10009563m.g
I
0.694
Bo2g080900
Brassica oleracea
Bo2g080900
I
0.689
Bo8g104300
Brassica oleracea
Bo8g104300
I
0.687
Bra031035
Brassica rapa
Bra031035
I
0.687
Bo8g067910
Brassica oleracea
Bo8g067910
I
0.685
Bra016553
Brassica rapa
Bra016553
I
0.685
Bo9g014380
Brassica oleracea
Bo9g014380
I
0.684
Bra035954
Brassica rapa
Bra035954
I
0.684
gene12738-v1.0-hybrid
Fragaria vesca
gene12738-v1.0-hybrid
I
0.681
Lus10028435.g
Linum usitatissimum
Lus10028435.g
I
0.680
Lus10041888.g
Linum usitatissimum
Lus10041888.g
I
0.680
Bra008131
Brassica rapa
Bra008131
I
0.679
PK14811.1
Cannabis sativa
PK14811.1
I
0.677
evm.TU.supercontig_28.71
Carica papaya
evm.TU.supercontig_28.71
I
0.676
MTR_2g034790
Medicago truncatula
MTR_2g034790
I
0.675
TCM_011660
Theobroma cacao
TCM_011660
I
0.675
Thhalv10018705m.g
Eutrema salsugineum
Thhalv10018705m.g
I
0.675
MYB34
Arabidopsis thaliana
AT5G60890
I
0.673
Bra013000
Brassica rapa
Bra013000
I
0.673
ATMYB34
Arabidopsis lyrata
fgenesh2_kg.8__2056__AT5G60890.1
I
0.673
Bostr.26833s0149
Boechera stricta
Bostr.26833s0149
I
0.673
Carubv10027524m.g
Capsella rubella
Carubv10027524m.g
I
0.673
Thhalv10004638m.g
Eutrema salsugineum
Thhalv10004638m.g
I
0.673
Gorai.003G097900
Gossypium raimondii
Gorai.003G097900
I
0.672
Bo7g098110
Brassica oleracea
Bo7g098110
I
0.670
GLYMA17G03480
Glycine max
GLYMA17G03480
I
0.666
MTR_4g121460
Medicago truncatula
MTR_4g121460
I
0.666
VIT_13s0084g00530
Vitis vinifera
VIT_13s0084g00530
I
0.664
Eucgr.C03554
Eucalyptus grandis
Eucgr.C03554
I
0.663
Bra029350
Brassica rapa
Bra029350
I
0.662
Aquca_073_00013
Aquilegia coerulea
Aquca_073_00013
I
0.661