CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Bra034751
(
Brassica rapa
)
Myb/SANT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00249 (Myb_DNA-binding)
IPR014778
Bra034751
T268094_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
PK21687.1
M01282_2.00
Cannabis sativa
HWAAACCYH
DRGGTTTWD
PBM
Lambert et al.(2019)
pTH11299
0.849
0.979
TRP5
M01266_2.00
Arabidopsis thaliana
NHWAAACCYH
DRGGTTTWDN
PBM
Lambert et al.(2019)
pTH9963
0.849
0.957
TRP2
M07092_2.00
Arabidopsis thaliana
AAACCCTAAACCCTAAACCC
GGGTTTAGGGTTTAGGGTTT
Dap-seq
OMalley et al.(2016)
TRP2_col_a
0.841
0.957
TRP2
M07093_2.00
Arabidopsis thaliana
AAACCCTAAACCCTAAACCCT
AGGGTTTAGGGTTTAGGGTTT
Dap-seq
OMalley et al.(2016)
TRP2_colamp_a
0.841
0.957
TRP1
M07148_2.00
Arabidopsis thaliana
AAACCCTAAACCCTAAACCCTAA
TTAGGGTTTAGGGTTTAGGGTTT
Dap-seq
OMalley et al.(2016)
TRP1_col
0.831
0.936
For this family, TFs with SR scores >
0.661
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Bra034751.1-P
Myb
497
547
RRPFSVTEVEALVQAVEELGTGRWRDVKLRAFENADHRTYVDLKDKWKTLV
Links
Other
Myb/SANT
family TFs
Other
Brassica rapa
TFs
197 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
ALUE_0000326401
Ascaris lumbricoides
ALUE_0000326401
I
ASIM_0001335601
Anisakis simplex
ASIM_0001335601
I
ASU_05094
Ascaris suum
ASU_05094
I
BGLB003270
Biomphalaria glabrata
BGLB003270
I
BGLB009720
Biomphalaria glabrata
BGLB009720
I
CapteG178189
Capitella teleta
CapteG178189
N
CapteG223236
Capitella teleta
CapteG223236
N
CGI_10015382
Crassostrea gigas
CGI_10015382
N
CGI_10024700
Crassostrea gigas
CGI_10024700
N
CLEC000050
Cimex lectularius
CLEC000050
N
CLEC001633
Cimex lectularius
CLEC001633
N
D917_09309
Trichinella nativa
D917_09309
N
D918_04648
Trichuris suis
D918_04648
N
DAPPUDRAFT_223098
Daphnia pulex
DAPPUDRAFT_223098
N
DME_0000215901
Dracunculus medinensis
DME_0000215901
I
EFV48635
Trichinella spiralis
EFV48635
N
EFV59523
Trichinella spiralis
EFV59523
N
EFV60132
Trichinella spiralis
EFV60132
N
GB46398
Apis mellifera
GB46398
N
HHAL003348-PA
Halyomorpha halys
HHAL003348-PA
N
ISCW006531
Ixodes scapularis
ISCW006531
I
PEQ_0001019701
Parascaris equorum
PEQ_0001019701
I
RPRC001027
Rhodnius prolixus
RPRC001027
N
Sakowv30032301m.g
Saccoglossus kowalevskii
Sakowv30032301m.g
N
SBAD_0000414301
Soboliphyme baturini
SBAD_0000414301
N
SBAD_0000555201
Soboliphyme baturini
SBAD_0000555201
N
SMAR014806
Strigamia maritima
SMAR014806
I
SPU_014528
Strongylocentrotus purpuratus
SPU_014528
N
SPU_021150
Strongylocentrotus purpuratus
SPU_021150
I
TMUE_s0069005700
Trichuris muris
TMUE_s0069005700
N
TTRE_0000080801
Trichuris trichiura
TTRE_0000080801
N
TTRE_0000080901
Trichuris trichiura
TTRE_0000080901
N