CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Bra035547
(
Brassica rapa
)
Myb/SANT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00249 (Myb_DNA-binding)
IPR014778
Bra035547
T268102_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
myb.Ph3
M02704_2.00
Petunia x hybrida
WAACNGTYW
WRACNGTTW
SELEX
Mathelier et al.(2014)
MA0054.1
0.743
0.785
myb.Ph3
M11070_2.00
Petunia x hybrida
RTAACSGTTTYHW
WDRAAACSGTTAY
Transfac
Matys et al.(2006)
P$MYBPH3_01
0.743
0.785
myb.Ph3
M11071_2.00
Petunia x hybrida
STAACTAACTHHH
DDDAGTTAGTTAS
Transfac
Matys et al.(2006)
P$MYBPH3_02
0.743
0.785
Q9FR42_TOBAC
M11076_2.00
Nicotiana tabacum
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MYBAS1_01
0.736
0.753
MYB101
M07051_2.00
Arabidopsis thaliana
NWHHNWAACCGWWHH
DDWWCGGTTWNDDWN
Dap-seq
OMalley et al.(2016)
MYB101_col_a
0.732
0.785
MYB101
M07052_2.00
Arabidopsis thaliana
DHHHVTAACYGWHWN
NWDWCRGTTABDDDH
Dap-seq
OMalley et al.(2016)
MYB101_colamp_a
0.732
0.785
Gam1
M02703_2.00
Hordeum vulgare
NVYAACSGMC
GKCSGTTRBN
SELEX
Mathelier et al.(2014)
MA0034.1
0.692
0.753
Gam1
M11061_2.00
Hordeum vulgare
YAACSRHM
KDYSGTTR
Transfac
Matys et al.(2006)
P$GAMYB_01
0.692
0.753
GAM1_ORYSI
M11055_2.00
Oryza sativa
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$GAMYB_Q2
0.692
0.753
For this family, TFs with SR scores >
0.661
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Bra035547.1-P
Myb
27
74
KGPWMAAEDEMLASYVRENGEGNWNSLQKNTGLTRCGKSCRLRWANHL
Bra035547.1-P
Myb
80
125
KGSFTDDEEHIIIQLHAQLGNKWARMAAQLPGRTDNEIKNYWNMRL
Links
Other
Myb/SANT
family TFs
Other
Brassica rapa
TFs
209 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
ATMYB120
Arabidopsis thaliana
AT5G55020
I
0.815
Bostr.26833s0761
Boechera stricta
Bostr.26833s0761
I
0.815
Cagra.1629s0073
Capsella grandiflora
Cagra.1629s0073
I
0.815
Carubv10026070m.g
Capsella rubella
Carubv10026070m.g
I
0.815
Thhalv10013018m.g
Eutrema salsugineum
Thhalv10013018m.g
I
0.815
Bo9g119060
Brassica oleracea
Bo9g119060
I
0.812
Bra002938
Brassica rapa
Bra002938
I
0.812
Bo3g021790
Brassica oleracea
Bo3g021790
I
0.787
Bra028997
Brassica rapa
Bra028997
I
0.787
Thhalv10025350m.g
Eutrema salsugineum
Thhalv10025350m.g
I
0.785
MYB97
Arabidopsis thaliana
AT4G26930
I
0.770
MYB97
Arabidopsis lyrata
fgenesh2_kg.7__1539__AT4G26930.1
I
0.770
TCM_011907
Theobroma cacao
TCM_011907
I
0.753
Ciclev10014958m.g
Citrus clementina
Ciclev10014958m.g
I
0.753
orange1.1g039708m.g
Citrus sinensis
orange1.1g039708m.g
I
0.753
Cucsa.148580
Cucumis sativus
Cucsa.148580
I
0.749
Cagra.0352s0034
Capsella grandiflora
Cagra.0352s0034
I
0.749
Carubv10025227m.g
Capsella rubella
Carubv10025227m.g
I
0.749
gene23946-v1.0-hybrid
Fragaria vesca
gene23946-v1.0-hybrid
I
0.749
Thhalv10016567m.g
Eutrema salsugineum
Thhalv10016567m.g
I
0.749
29823.m000215
Ricinus communis
29823.m000215
I
0.747
cassava11031.m1
Manihot esculenta
cassava11031.m1
I
0.747
Gorai.007G312700
Gossypium raimondii
Gorai.007G312700
I
0.744
PGSC0003DMG400028949
Solanum tuberosum
PGSC0003DMG400028949
I
0.743
Solyc07g052300.2
Solanum lycopersicum
Solyc07g052300.2
I
0.743
myb.Ph3
Petunia x hybrida
Q02994_PETHY
D
0.743
Ciclev10010620m.g
Citrus clementina
Ciclev10010620m.g
I
0.741
orange1.1g046419m.g
Citrus sinensis
orange1.1g046419m.g
I
0.741
GLYMA18G10921
Glycine max
GLYMA18G10921
I
0.739
MTR_3g052450
Medicago truncatula
MTR_3g052450
I
0.738
TCM_030853
Theobroma cacao
TCM_030853
I
0.738
Gorai.002G089900
Gossypium raimondii
Gorai.002G089900
I
0.738
Q9FR42_TOBAC
Nicotiana tabacum
Q9FR42_TOBAC
D
0.736
PK15478.1
Cannabis sativa
PK15478.1
I
0.734
MYB101
Arabidopsis thaliana
AT2G32460
D
0.732
Bo3g026690
Brassica oleracea
Bo3g026690
I
0.732
Bra021791
Brassica rapa
Bra021791
I
0.732
MYB101
Arabidopsis lyrata
fgenesh2_kg.4__1233__AT2G32460.2
I
0.732
Bostr.23794s0867
Boechera stricta
Bostr.23794s0867
I
0.732
SapurV1A.1897s0070
Salix purpurea
SapurV1A.1897s0070
I
0.732
SapurV1A.2567s0040
Salix purpurea
SapurV1A.2567s0040
I
0.732
Cla007782
Citrullus lanatus
Cla007782
I
0.731
AC217264.3_FG005
Zea mays
AC217264.3_FG005
I
0.730
GRMZM2G070523
Zea mays
GRMZM2G070523
I
0.730
MTR_2g088170
Medicago truncatula
MTR_2g088170
I
0.730
Sb01g015920
Sorghum bicolor
Sb01g015920
I
0.730
Gorai.013G159200
Gossypium raimondii
Gorai.013G159200
I
0.729
VIT_19s0090g00590
Vitis vinifera
VIT_19s0090g00590
I
0.725
Aquca_005_00025
Aquilegia coerulea
Aquca_005_00025
I
0.725
PRUPE_ppa017451mg
Prunus persica
PRUPE_ppa017451mg
I
0.724
Pm015094
Prunus mume
Pm015094
I
0.724
MDP0000175835
Malus domestica
MDP0000175835
I
0.724
Bo4g178040
Brassica oleracea
Bo4g178040
I
0.721
SapurV1A.0014s1240
Salix purpurea
SapurV1A.0014s1240
I
0.720
MTR_3g052430
Medicago truncatula
MTR_3g052430
I
0.719
Ca_07119
Cicer arietinum
Ca_07119
I
0.718
MDP0000179306
Malus domestica
MDP0000179306
I
0.717
MDP0000308617
Malus domestica
MDP0000308617
I
0.717
Bra022888
Brassica rapa
Bra022888
I
0.716
GSMUA_Achr4G23690_001
Musa acuminata
GSMUA_Achr4G23690_001
I
0.714
Ca_20081
Cicer arietinum
Ca_20081
I
0.714
LjT02G13.10.nc
Lotus japonicus
LjT02G13.10.nc
I
0.714
Si039629m.g
Setaria italica
Si039629m.g
I
0.713
Pavir.Ib03827
Panicum virgatum
Pavir.Ib03827
I
0.713
MYB101
Populus trichocarpa
POPTR_0002s21300
I
0.712
Lus10021539.g
Linum usitatissimum
Lus10021539.g
I
0.711
Lus10040063.g
Linum usitatissimum
Lus10040063.g
I
0.711
Bo4g076940
Brassica oleracea
Bo4g076940
I
0.709
OB03G32840
Oryza brachyantha
OB03G32840
I
0.709
Lus10027189.g
Linum usitatissimum
Lus10027189.g
I
0.709
Lus10035275.g
Linum usitatissimum
Lus10035275.g
I
0.709
AMTR_s00037p00177500
Amborella trichopoda
AMTR_s00037p00177500
I
0.708
gw1.238.44.1
Physcomitrella patens
gw1.238.44.1
I
0.708
Bo4g046000
Brassica oleracea
Bo4g046000
I
0.707
Bra005597
Brassica rapa
Bra005597
I
0.707
MDP0000151688
Malus domestica
MDP0000151688
I
0.707
MDP0000176798
Malus domestica
MDP0000176798
I
0.707
Cla005406
Citrullus lanatus
Cla005406
I
0.706
Cucsa.060080
Cucumis sativus
Cucsa.060080
I
0.706
GLYMA08G42920
Glycine max
GLYMA08G42920
I
0.704
PRUPE_ppa019943mg
Prunus persica
PRUPE_ppa019943mg
I
0.702
PRUPE_ppa022465mg
Prunus persica
PRUPE_ppa022465mg
I
0.702
cassava44767.m1
Manihot esculenta
cassava44767.m1
I
0.702
gene03321-v1.0-hybrid
Fragaria vesca
gene03321-v1.0-hybrid
I
0.702
gene03323-v1.0-hybrid
Fragaria vesca
gene03323-v1.0-hybrid
I
0.702
PGSC0003DMG400013897
Solanum tuberosum
PGSC0003DMG400013897
I
0.699
Ca_25013
Cicer arietinum
Ca_25013
I
0.699
LjSGA_010688.1
Lotus japonicus
LjSGA_010688.1
I
0.698
Bra012038
Brassica rapa
Bra012038
I
0.697
GLYMA08G42955
Glycine max
GLYMA08G42955
I
0.697
Cla013880
Citrullus lanatus
Cla013880
I
0.696
cassava30977.valid.m1
Manihot esculenta
cassava30977.valid.m1
I
0.695
Lus10008685.g
Linum usitatissimum
Lus10008685.g
I
0.695
Lus10026142.g
Linum usitatissimum
Lus10026142.g
I
0.695
GLYMA12G31950
Glycine max
GLYMA12G31950
I
0.694
GLYMA13G38521
Glycine max
GLYMA13G38521
I
0.694
Gorai.007G312400
Gossypium raimondii
Gorai.007G312400
I
0.694
MYB101
Vitis vinifera
VIT_12s0059g00700
I
0.693
mgf002965m
Mimulus guttatus
mgf002965m
I
0.693
SapurV1A.0008s0050
Salix purpurea
SapurV1A.0008s0050
I
0.693
GAM1
Oryza indica
BGIOSGA004670
I
0.692
BRADI2G53010
Brachypodium distachyon
BRADI2G53010
I
0.692
F775_28392
Aegilops tauschii
F775_28392
I
0.692
GAM1_ORYSI
Oryza sativa
GAM1_ORYSI
D
0.692
MTR_3g011610
Medicago truncatula
MTR_3g011610
I
0.692
OB01G43550
Oryza brachyantha
OB01G43550
I
0.692
OBART01G34660
Oryza barthii
OBART01G34660
I
0.692
OGLUM01G20920
Oryza glumaepatula
OGLUM01G20920
I
0.692
OLONG_020610
Oryza longistaminata
OLONG_020610
I
0.692
OMERI01G31990
Oryza meridionalis
OMERI01G31990
I
0.692
GAMYB
Oryza sativa
OS01G0812000
I
0.692
Gam1
Hordeum vulgare
Q96464_HORVU
D
0.692
Si000907m.g
Setaria italica
Si000907m.g
I
0.692
TRAES3BF027700010CFD_g
Triticum aestivum
TRAES3BF027700010CFD_g
I
0.692
TRIUR3_27104
Triticum urartu
TRIUR3_27104
I
0.692
Cucsa.364400
Cucumis sativus
Cucsa.364400
I
0.692
Pavir.Ea03206
Panicum virgatum
Pavir.Ea03206
I
0.692
mgf020500m
Mimulus guttatus
mgf020500m
I
0.690
Eucgr.A01122
Eucalyptus grandis
Eucgr.A01122
I
0.690
GLYMA06G47000
Glycine max
GLYMA06G47000
I
0.688
GRMZM2G139688
Zea mays
GRMZM2G139688
I
0.688
SELMODRAFT_128781
Selaginella moellendorffii
SELMODRAFT_128781
I
0.687
SELMODRAFT_81112
Selaginella moellendorffii
SELMODRAFT_81112
I
0.687
TCM_041010
Theobroma cacao
TCM_041010
I
0.687
cassava40302.m1
Manihot esculenta
cassava40302.m1
I
0.687
Aquca_014_00928
Aquilegia coerulea
Aquca_014_00928
I
0.687
evm.TU.supercontig_12.292
Carica papaya
evm.TU.supercontig_12.292
I
0.687
Gorai.012G022000
Gossypium raimondii
Gorai.012G022000
I
0.687
MLOC_6041
Hordeum vulgare
MLOC_6041
I
0.686
OBART03G24120
Oryza barthii
OBART03G24120
I
0.684
OGLUM03G24880
Oryza glumaepatula
OGLUM03G24880
I
0.684
OLONG_025057
Oryza longistaminata
OLONG_025057
I
0.684
OMERI03G21920
Oryza meridionalis
OMERI03G21920
I
0.684
ONIVA04G15310
Oryza nivara
ONIVA04G15310
I
0.684
OPUNC03G22220
Oryza punctata
OPUNC03G22220
I
0.684
ORGLA03G0224700
Oryza glaberrima
ORGLA03G0224700
I
0.684
ORUFI03G24730
Oryza rufipogon
ORUFI03G24730
I
0.684
OS03G0578900
Oryza sativa
OS03G0578900
I
0.684
PRUPE_ppa003628mg
Prunus persica
PRUPE_ppa003628mg
I
0.684
Pm016605
Prunus mume
Pm016605
I
0.684
gw1.66.160.1
Physcomitrella patens
gw1.66.160.1
I
0.684
Ciclev10000756m.g
Citrus clementina
Ciclev10000756m.g
I
0.684
orange1.1g011938m.g
Citrus sinensis
orange1.1g011938m.g
I
0.684
AMTR_s00038p00150140
Amborella trichopoda
AMTR_s00038p00150140
I
0.683
GSMUA_Achr1G17150_001
Musa acuminata
GSMUA_Achr1G17150_001
I
0.683
SELMODRAFT_117411
Selaginella moellendorffii
SELMODRAFT_117411
I
0.683
SELMODRAFT_84369
Selaginella moellendorffii
SELMODRAFT_84369
I
0.683
VIT_06s0009g02480
Vitis vinifera
VIT_06s0009g02480
I
0.682
Ca_21739
Cicer arietinum
Ca_21739
I
0.681
Pavir.Eb03517
Panicum virgatum
Pavir.Eb03517
I
0.681
GLYMA13G25716
Glycine max
GLYMA13G25716
I
0.680
GLYMA15G35860
Glycine max
GLYMA15G35860
I
0.680
MTR_1g021230
Medicago truncatula
MTR_1g021230
I
0.680
MTR_8g042410
Medicago truncatula
MTR_8g042410
I
0.680
PGSC0003DMG400005918
Solanum tuberosum
PGSC0003DMG400005918
I
0.678
POPTR_0001s07330
Populus trichocarpa
POPTR_0001s07330
I
0.678
POPTR_0003s18900
Populus trichocarpa
POPTR_0003s18900
I
0.678
POPTR_0009s02380
Populus trichocarpa
POPTR_0009s02380
I
0.678
Solyc06g073640.2
Solanum lycopersicum
Solyc06g073640.2
I
0.678
TCM_044611
Theobroma cacao
TCM_044611
I
0.678
VIT_13s0067g01630
Vitis vinifera
VIT_13s0067g01630
I
0.678
29686.m000890
Ricinus communis
29686.m000890
I
0.678
29785.m000932
Ricinus communis
29785.m000932
I
0.678
cassava1461.valid.m1
Manihot esculenta
cassava1461.valid.m1
I
0.678
mgf010934m
Mimulus guttatus
mgf010934m
I
0.678
mgf019173m
Mimulus guttatus
mgf019173m
I
0.678
mgf025568m
Mimulus guttatus
mgf025568m
I
0.678
evm.TU.supercontig_33.151
Carica papaya
evm.TU.supercontig_33.151
I
0.678
evm.TU.supercontig_34.210
Carica papaya
evm.TU.supercontig_34.210
I
0.678
Gorai.010G212500
Gossypium raimondii
Gorai.010G212500
I
0.678
SapurV1A.0369s0230
Salix purpurea
SapurV1A.0369s0230
I
0.678
SapurV1A.0537s0200
Salix purpurea
SapurV1A.0537s0200
I
0.678
chr3.CM0005.370.nc
Lotus japonicus
chr3.CM0005.370.nc
I
0.678
PDK_20s1831811g001
Phoenix dactylifera
PDK_20s1831811g001
I
0.678
OBART06G20450
Oryza barthii
OBART06G20450
I
0.677
OGLUM06G21530
Oryza glumaepatula
OGLUM06G21530
I
0.677
OLONG_019401
Oryza longistaminata
OLONG_019401
I
0.677
OMERI06G21070
Oryza meridionalis
OMERI06G21070
I
0.677
ONIVA06G24230
Oryza nivara
ONIVA06G24230
I
0.677
OPUNC06G18670
Oryza punctata
OPUNC06G18670
I
0.677
ORGLA06G0168900
Oryza glaberrima
ORGLA06G0168900
I
0.677
ORUFI06G21880
Oryza rufipogon
ORUFI06G21880
I
0.677
Eucgr.G03183
Eucalyptus grandis
Eucgr.G03183
I
0.675
gene00431-v1.0-hybrid
Fragaria vesca
gene00431-v1.0-hybrid
I
0.675
MDP0000147309
Malus domestica
MDP0000147309
I
0.675
SapurV1A.1951s0020
Salix purpurea
SapurV1A.1951s0020
I
0.675
Gorai.006G121900
Gossypium raimondii
Gorai.006G121900
I
0.673
Gorai.009G301100
Gossypium raimondii
Gorai.009G301100
I
0.673
Lus10026787.g
Linum usitatissimum
Lus10026787.g
I
0.673
Lus10036103.g
Linum usitatissimum
Lus10036103.g
I
0.673
LjSGA_057622.2
Lotus japonicus
LjSGA_057622.2
I
0.673
GLYMA04G15150
Glycine max
GLYMA04G15150
I
0.672
GSMUA_Achr7G00280_001
Musa acuminata
GSMUA_Achr7G00280_001
I
0.672
Bostr.13129s0364
Boechera stricta
Bostr.13129s0364
I
0.672
Cagra.2117s0052
Capsella grandiflora
Cagra.2117s0052
I
0.672
Carubv10000715m.g
Capsella rubella
Carubv10000715m.g
I
0.672
Thhalv10013329m.g
Eutrema salsugineum
Thhalv10013329m.g
I
0.672
Solyc11g072060.1
Solanum lycopersicum
Solyc11g072060.1
I
0.671
PK17293.1
Cannabis sativa
PK17293.1
I
0.671
MYB33
Arabidopsis lyrata
fgenesh2_kg.6__546__AT5G06100.3
I
0.668
PGSC0003DMG400022689
Solanum tuberosum
PGSC0003DMG400022689
I
0.667
Sb10g023665
Sorghum bicolor
Sb10g023665
I
0.667
Si007070m.g
Setaria italica
Si007070m.g
I
0.667
Solyc01g009070.2
Solanum lycopersicum
Solyc01g009070.2
I
0.667
Pavir.Da00534
Panicum virgatum
Pavir.Da00534
I
0.667
F775_23034
Aegilops tauschii
F775_23034
I
0.665
Sb03g037680
Sorghum bicolor
Sb03g037680
I
0.665
TRIUR3_20797
Triticum urartu
TRIUR3_20797
I
0.665
LPERR03G20110
Leersia perrieri
LPERR03G20110
I
0.664