CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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BRADI1G32720
(
Brachypodium distachyon
)
Myb/SANT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00249 (Myb_DNA-binding)
IPR014778
BRADI1G32720
T268178_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Gam1
M02703_2.00
Hordeum vulgare
NVYAACSGMC
GKCSGTTRBN
SELEX
Mathelier et al.(2014)
MA0034.1
0.697
0.720
Gam1
M11061_2.00
Hordeum vulgare
YAACSRHM
KDYSGTTR
Transfac
Matys et al.(2006)
P$GAMYB_01
0.697
0.720
GAM1_ORYSI
M11055_2.00
Oryza sativa
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$GAMYB_Q2
0.680
0.710
myb.Ph3
M02704_2.00
Petunia x hybrida
WAACNGTYW
WRACNGTTW
SELEX
Mathelier et al.(2014)
MA0054.1
0.661
0.720
myb.Ph3
M11070_2.00
Petunia x hybrida
RTAACSGTTTYHW
WDRAAACSGTTAY
Transfac
Matys et al.(2006)
P$MYBPH3_01
0.661
0.720
myb.Ph3
M11071_2.00
Petunia x hybrida
STAACTAACTHHH
DDDAGTTAGTTAS
Transfac
Matys et al.(2006)
P$MYBPH3_02
0.661
0.720
For this family, TFs with SR scores >
0.661
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
BRADI1G32720.1
Myb
27
74
KGPWTQAEDTVLLEHVRRHGEGNWNAVRREAGLQRCGKSCRLRWANHL
BRADI1G32720.1
Myb
80
125
KGPFSPDEERLILRLHGLIGNKWARISSHLPGRTDNEVKNYWNTRL
Links
Other
Myb/SANT
family TFs
Other
Brachypodium distachyon
TFs
185 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
F775_00954
Aegilops tauschii
F775_00954
I
0.889
Traes_7AL_0AD4A7A87
Triticum aestivum
Traes_7AL_0AD4A7A87
I
0.889
Traes_7DL_FAF2AE9FB
Triticum aestivum
Traes_7DL_FAF2AE9FB
I
0.889
TRIUR3_17146
Triticum urartu
TRIUR3_17146
I
0.889
Si006555m.g
Setaria italica
Si006555m.g
I
0.833
Pavir.Db00593
Panicum virgatum
Pavir.Db00593
I
0.833
BGIOSGA020673
Oryza indica
BGIOSGA020673
I
0.829
OGLUM06G26120
Oryza glumaepatula
OGLUM06G26120
I
0.829
OMERI06G24960
Oryza meridionalis
OMERI06G24960
I
0.829
ONIVA06G28020
Oryza nivara
ONIVA06G28020
I
0.829
OPUNC06G22490
Oryza punctata
OPUNC06G22490
I
0.829
ORUFI06G26670
Oryza rufipogon
ORUFI06G26670
I
0.829
OS06G0679400
Oryza sativa
OS06G0679400
I
0.829
Pavir.Da00077
Panicum virgatum
Pavir.Da00077
I
0.822
Sb10g027280
Sorghum bicolor
Sb10g027280
I
0.818
LPERR06G20610
Leersia perrieri
LPERR06G20610
I
0.794
GRMZM2G161512
Zea mays
GRMZM2G161512
N
0.779
F775_14392
Aegilops tauschii
F775_14392
I
0.772
Traes_6AS_5562B97F7
Triticum aestivum
Traes_6AS_5562B97F7
I
0.772
Traes_6DS_A0EC5D808
Triticum aestivum
Traes_6DS_A0EC5D808
I
0.772
TRIUR3_22706
Triticum urartu
TRIUR3_22706
I
0.772
GSMUA_Achr4G23690_001
Musa acuminata
GSMUA_Achr4G23690_001
I
0.748
MYB101
Vitis vinifera
VIT_12s0059g00700
I
0.743
MDP0000147309
Malus domestica
MDP0000147309
I
0.737
Si039629m.g
Setaria italica
Si039629m.g
I
0.732
Pavir.Ib03827
Panicum virgatum
Pavir.Ib03827
I
0.732
OBART03G24120
Oryza barthii
OBART03G24120
I
0.731
OGLUM03G24880
Oryza glumaepatula
OGLUM03G24880
I
0.731
OLONG_025057
Oryza longistaminata
OLONG_025057
I
0.731
OMERI03G21920
Oryza meridionalis
OMERI03G21920
I
0.731
ONIVA04G15310
Oryza nivara
ONIVA04G15310
I
0.731
OPUNC03G22220
Oryza punctata
OPUNC03G22220
I
0.731
ORGLA03G0224700
Oryza glaberrima
ORGLA03G0224700
I
0.731
ORUFI03G24730
Oryza rufipogon
ORUFI03G24730
I
0.731
OS03G0578900
Oryza sativa
OS03G0578900
I
0.731
Lus10021539.g
Linum usitatissimum
Lus10021539.g
I
0.726
GSMUA_Achr7G00280_001
Musa acuminata
GSMUA_Achr7G00280_001
I
0.724
MDP0000308617
Malus domestica
MDP0000308617
I
0.724
Lus10040063.g
Linum usitatissimum
Lus10040063.g
I
0.717
Gorai.007G312700
Gossypium raimondii
Gorai.007G312700
I
0.716
mgf010934m
Mimulus guttatus
mgf010934m
I
0.710
mgf019173m
Mimulus guttatus
mgf019173m
I
0.710
evm.TU.supercontig_12.292
Carica papaya
evm.TU.supercontig_12.292
I
0.710
GRMZM2G343068
Zea mays
GRMZM2G343068
N
0.708
LjT02G13.10.nc
Lotus japonicus
LjT02G13.10.nc
I
0.708
OB03G32840
Oryza brachyantha
OB03G32840
I
0.706
AC217264.3_FG005
Zea mays
AC217264.3_FG005
I
0.702
GRMZM2G070523
Zea mays
GRMZM2G070523
I
0.702
MLOC_6041
Hordeum vulgare
MLOC_6041
I
0.702
Sb01g015920
Sorghum bicolor
Sb01g015920
I
0.702
AMTR_s00038p00150140
Amborella trichopoda
AMTR_s00038p00150140
I
0.700
gene03321-v1.0-hybrid
Fragaria vesca
gene03321-v1.0-hybrid
I
0.700
gene03323-v1.0-hybrid
Fragaria vesca
gene03323-v1.0-hybrid
I
0.700
MDP0000179306
Malus domestica
MDP0000179306
I
0.700
F775_23034
Aegilops tauschii
F775_23034
I
0.698
TRIUR3_20797
Triticum urartu
TRIUR3_20797
I
0.698
BRADI2G53010
Brachypodium distachyon
BRADI2G53010
I
0.697
F775_28392
Aegilops tauschii
F775_28392
I
0.697
GRMZM2G139688
Zea mays
GRMZM2G139688
I
0.697
Gam1
Hordeum vulgare
Q96464_HORVU
D
0.697
TRAES3BF027700010CFD_g
Triticum aestivum
TRAES3BF027700010CFD_g
I
0.697
TRIUR3_27104
Triticum urartu
TRIUR3_27104
I
0.697
gene00431-v1.0-hybrid
Fragaria vesca
gene00431-v1.0-hybrid
I
0.697
Pavir.Ea03206
Panicum virgatum
Pavir.Ea03206
I
0.697
Cla005406
Citrullus lanatus
Cla005406
I
0.696
Lus10027189.g
Linum usitatissimum
Lus10027189.g
I
0.694
Lus10035275.g
Linum usitatissimum
Lus10035275.g
I
0.694
PRUPE_ppa017451mg
Prunus persica
PRUPE_ppa017451mg
I
0.693
Pm015094
Prunus mume
Pm015094
I
0.693
cassava40302.m1
Manihot esculenta
cassava40302.m1
I
0.693
Ciclev10010620m.g
Citrus clementina
Ciclev10010620m.g
I
0.693
Gorai.013G159200
Gossypium raimondii
Gorai.013G159200
I
0.693
MDP0000151688
Malus domestica
MDP0000151688
I
0.693
MDP0000176798
Malus domestica
MDP0000176798
I
0.693
orange1.1g046419m.g
Citrus sinensis
orange1.1g046419m.g
I
0.693
AMTR_s00037p00177500
Amborella trichopoda
AMTR_s00037p00177500
I
0.691
cassava11031.m1
Manihot esculenta
cassava11031.m1
I
0.691
Aquca_005_00025
Aquilegia coerulea
Aquca_005_00025
I
0.691
GSMUA_Achr7G13700_001
Musa acuminata
GSMUA_Achr7G13700_001
I
0.690
GSMUA_Achr1G17150_001
Musa acuminata
GSMUA_Achr1G17150_001
I
0.688
PRUPE_ppa003628mg
Prunus persica
PRUPE_ppa003628mg
I
0.688
SELMODRAFT_117411
Selaginella moellendorffii
SELMODRAFT_117411
I
0.688
SELMODRAFT_128781
Selaginella moellendorffii
SELMODRAFT_128781
I
0.688
SELMODRAFT_81112
Selaginella moellendorffii
SELMODRAFT_81112
I
0.688
SELMODRAFT_84369
Selaginella moellendorffii
SELMODRAFT_84369
I
0.688
Si000907m.g
Setaria italica
Si000907m.g
I
0.688
TCM_030853
Theobroma cacao
TCM_030853
I
0.688
Pm016605
Prunus mume
Pm016605
I
0.688
Gorai.002G089900
Gossypium raimondii
Gorai.002G089900
I
0.688
LPERR03G20110
Leersia perrieri
LPERR03G20110
I
0.687
Pavir.Eb03517
Panicum virgatum
Pavir.Eb03517
I
0.687
PGSC0003DMG400013897
Solanum tuberosum
PGSC0003DMG400013897
I
0.686
OLONG_019401
Oryza longistaminata
OLONG_019401
I
0.685
GSMUA_Achr10G14030_001
Musa acuminata
GSMUA_Achr10G14030_001
I
0.684
GSMUA_Achr5G06530_001
Musa acuminata
GSMUA_Achr5G06530_001
I
0.684
GSMUA_Achr6G14840_001
Musa acuminata
GSMUA_Achr6G14840_001
I
0.684
Lus10026787.g
Linum usitatissimum
Lus10026787.g
I
0.684
Lus10036103.g
Linum usitatissimum
Lus10036103.g
I
0.684
MDP0000175835
Malus domestica
MDP0000175835
I
0.683
PRUPE_ppa022465mg
Prunus persica
PRUPE_ppa022465mg
I
0.682
ATMYB120
Arabidopsis thaliana
AT5G55020
I
0.681
Bo9g119060
Brassica oleracea
Bo9g119060
I
0.681
Bra002938
Brassica rapa
Bra002938
I
0.681
Bostr.26833s0761
Boechera stricta
Bostr.26833s0761
I
0.681
Cagra.1629s0073
Capsella grandiflora
Cagra.1629s0073
I
0.681
Carubv10026070m.g
Capsella rubella
Carubv10026070m.g
I
0.681
Thhalv10013018m.g
Eutrema salsugineum
Thhalv10013018m.g
I
0.681
GAM1
Oryza indica
BGIOSGA004670
I
0.680
GAM1_ORYSI
Oryza sativa
GAM1_ORYSI
D
0.680
GLYMA13G25716
Glycine max
GLYMA13G25716
I
0.680
OB01G43550
Oryza brachyantha
OB01G43550
I
0.680
OBART01G34660
Oryza barthii
OBART01G34660
I
0.680
OGLUM01G20920
Oryza glumaepatula
OGLUM01G20920
I
0.680
OLONG_020610
Oryza longistaminata
OLONG_020610
I
0.680
OMERI01G31990
Oryza meridionalis
OMERI01G31990
I
0.680
GAMYB
Oryza sativa
OS01G0812000
I
0.680
VIT_13s0067g01630
Vitis vinifera
VIT_13s0067g01630
I
0.680
Eucgr.G03183
Eucalyptus grandis
Eucgr.G03183
I
0.680
MYB97
Arabidopsis thaliana
AT4G26930
I
0.679
MYB97
Arabidopsis lyrata
fgenesh2_kg.7__1539__AT4G26930.1
I
0.679
VIT_06s0009g02480
Vitis vinifera
VIT_06s0009g02480
I
0.679
mgf002965m
Mimulus guttatus
mgf002965m
I
0.679
Eucgr.A01122
Eucalyptus grandis
Eucgr.A01122
I
0.679
PGSC0003DMG400028949
Solanum tuberosum
PGSC0003DMG400028949
I
0.678
Solyc07g052300.2
Solanum lycopersicum
Solyc07g052300.2
I
0.678
Cucsa.060080
Cucumis sativus
Cucsa.060080
I
0.678
Pavir.Ab00447
Panicum virgatum
Pavir.Ab00447
I
0.678
chr3.CM0005.370.nc
Lotus japonicus
chr3.CM0005.370.nc
I
0.678
mgf020500m
Mimulus guttatus
mgf020500m
I
0.676
F775_08967
Aegilops tauschii
F775_08967
I
0.675
GLYMA08G42955
Glycine max
GLYMA08G42955
I
0.675
PRUPE_ppa019943mg
Prunus persica
PRUPE_ppa019943mg
I
0.675
TRIUR3_15006
Triticum urartu
TRIUR3_15006
I
0.675
Eucgr.A02110
Eucalyptus grandis
Eucgr.A02110
I
0.674
GLYMA08G42920
Glycine max
GLYMA08G42920
I
0.673
MYB33
Arabidopsis lyrata
fgenesh2_kg.6__546__AT5G06100.3
I
0.671
MTR_1g021230
Medicago truncatula
MTR_1g021230
I
0.671
MTR_3g052430
Medicago truncatula
MTR_3g052430
I
0.671
MTR_8g042410
Medicago truncatula
MTR_8g042410
I
0.671
POPTR_0001s07330
Populus trichocarpa
POPTR_0001s07330
I
0.671
POPTR_0003s18900
Populus trichocarpa
POPTR_0003s18900
I
0.671
Sb03g037680
Sorghum bicolor
Sb03g037680
I
0.671
TCM_044611
Theobroma cacao
TCM_044611
I
0.671
Ca_25013
Cicer arietinum
Ca_25013
I
0.671
Cla013880
Citrullus lanatus
Cla013880
I
0.671
29686.m000890
Ricinus communis
29686.m000890
I
0.671
cassava1461.valid.m1
Manihot esculenta
cassava1461.valid.m1
I
0.671
cassava44767.m1
Manihot esculenta
cassava44767.m1
I
0.671
Cucsa.364400
Cucumis sativus
Cucsa.364400
I
0.671
evm.TU.supercontig_33.151
Carica papaya
evm.TU.supercontig_33.151
I
0.671
Gorai.010G212500
Gossypium raimondii
Gorai.010G212500
I
0.671
Lus10008685.g
Linum usitatissimum
Lus10008685.g
I
0.671
Lus10026142.g
Linum usitatissimum
Lus10026142.g
I
0.671
SapurV1A.0369s0230
Salix purpurea
SapurV1A.0369s0230
I
0.671
SapurV1A.0537s0200
Salix purpurea
SapurV1A.0537s0200
I
0.671
Pm011812
Prunus mume
Pm011812
I
0.667
Gorai.009G301100
Gossypium raimondii
Gorai.009G301100
I
0.667
LjSGA_057622.2
Lotus japonicus
LjSGA_057622.2
I
0.667
AMTR_s00068p00099460
Amborella trichopoda
AMTR_s00068p00099460
I
0.666
Ca_20081
Cicer arietinum
Ca_20081
I
0.666
29823.m000215
Ricinus communis
29823.m000215
I
0.666
MTR_3g011610
Medicago truncatula
MTR_3g011610
I
0.664
OPUNC06G18670
Oryza punctata
OPUNC06G18670
I
0.664
PGSC0003DMG400005918
Solanum tuberosum
PGSC0003DMG400005918
I
0.664
Sb10g023665
Sorghum bicolor
Sb10g023665
I
0.664
Si007070m.g
Setaria italica
Si007070m.g
I
0.664
Solyc06g073640.2
Solanum lycopersicum
Solyc06g073640.2
I
0.664
TCM_011907
Theobroma cacao
TCM_011907
I
0.664
TCM_041010
Theobroma cacao
TCM_041010
I
0.664
cassava30977.valid.m1
Manihot esculenta
cassava30977.valid.m1
I
0.664
gw1.238.44.1
Physcomitrella patens
gw1.238.44.1
I
0.664
gw1.66.160.1
Physcomitrella patens
gw1.66.160.1
I
0.664
Bostr.13129s0364
Boechera stricta
Bostr.13129s0364
I
0.664
Cagra.2117s0052
Capsella grandiflora
Cagra.2117s0052
I
0.664
Carubv10000715m.g
Capsella rubella
Carubv10000715m.g
I
0.664
Pavir.Da00534
Panicum virgatum
Pavir.Da00534
I
0.664
Thhalv10013329m.g
Eutrema salsugineum
Thhalv10013329m.g
I
0.664
VIT_09s0002g01410
Vitis vinifera
VIT_09s0002g01410
I
0.663
Bo3g021790
Brassica oleracea
Bo3g021790
I
0.662
Bra028997
Brassica rapa
Bra028997
I
0.662
Gorai.006G121900
Gossypium raimondii
Gorai.006G121900
I
0.662
Gorai.012G022000
Gossypium raimondii
Gorai.012G022000
I
0.662
PK15478.1
Cannabis sativa
PK15478.1
I
0.662
myb.Ph3
Petunia x hybrida
Q02994_PETHY
D
0.661
e_gw1.6.239.1
Physcomitrella patens
e_gw1.6.239.1
I
0.661