CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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fgenesh1_pg.C_scaffold_2000950
(
Arabidopsis lyrata
)
Myb/SANT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00249 (Myb_DNA-binding)
IPR014778
fgenesh1_pg.C_scaffold_2000950
T270670_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
MYB113
M07026_2.00
Arabidopsis thaliana
VTAACKRAHTH
DADTYMGTTAB
Dap-seq
OMalley et al.(2016)
MYB113_col_a
0.796
0.849
For this family, TFs with SR scores >
0.661
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
fgenesh1_pg.C_scaffold_2000950
Myb
10
57
KGAWTAEEDSLLRQCIDKYGEGKWNKLPLRAGLNRCSKSCRERWLNYL
fgenesh1_pg.C_scaffold_2000950
Myb
63
108
RGKFGSDEVDLLLRLHKLLGNRWSLIAGRLPGRTANDVKNYWTTHF
Links
Other
Myb/SANT
family TFs
Other
Arabidopsis lyrata
TFs
105 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
PGUG_04993
Candida guilliermondii
PGUG_04993
N
CTRG_03710
Candida tropicalis
CTRG_03710
N
LELG_03639
Lodderomyces elongisporus
LELG_03639
N
PGUG_04993
Meyerozyma guilliermondii
PGUG_04993
N
SPAPADRAFT_153792
Spathaspora passalidarum
SPAPADRAFT_153792
N