fgenesh2_kg.4__1876__AT2G38090.1 (Arabidopsis lyrata)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 fgenesh2_kg.4__1876__AT2G38090.1 T270785_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT2G38090
M07055_2.00 		Arabidopsis thaliana
HHBAWNYTTATCYWNWHYNBN
NVNRDWNWRGATAARNWTVDD		 Dap-seq
OMalley et al.(2016)
At2g38090_col_a 		0.886 0.979
PK27693.1
M01285_2.00 		Cannabis sativa
NNYTATCBNN
NNVGATARNN		 PBM
Lambert et al.(2019)
pTH11302 		0.762 0.872
PK27213.1
M01284_2.00 		Cannabis sativa
NHWATCNNNN
NNNNGATWDN		 PBM
Lambert et al.(2019)
pTH10196 		0.712 0.809
PK27213.1
M02356_2.00 		Cannabis sativa
NHHATCNNNN
NNNNGATDDN		 PBM
Weirauch et al.(2014)
pTH9600 		0.712 0.809
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
fgenesh2_kg.4__1876__AT2G38090.1 Myb 140 187

Links

Other Myb/SANT family TFs
Other Arabidopsis lyrata TFs

93 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Thhalv10017008m.g Eutrema salsugineum Thhalv10017008m.g I 0.902
AT2G38090 Arabidopsis thaliana AT2G38090 D 0.886
Bo4g029810 Brassica oleracea Bo4g029810 I 0.879
Cagra.0090s0025 Capsella grandiflora Cagra.0090s0025 I 0.879
Carubv10023736m.g Capsella rubella Carubv10023736m.g I 0.879
Bo4g187390 Brassica oleracea Bo4g187390 I 0.868
Bra005139 Brassica rapa Bra005139 I 0.868
Bra017138 Brassica rapa Bra017138 I 0.868
Bostr.23794s0264 Boechera stricta Bostr.23794s0264 I 0.868
Bo3g032160 Brassica oleracea Bo3g032160 I 0.862
Bra000038 Brassica rapa Bra000038 I 0.862
evm.TU.supercontig_1130.1 Carica papaya evm.TU.supercontig_1130.1 I 0.801
cassava43688.valid.m1 Manihot esculenta cassava43688.valid.m1 I 0.797
Gorai.002G261600 Gossypium raimondii Gorai.002G261600 I 0.797
MTR_7g067080 Medicago truncatula MTR_7g067080 I 0.793
POPTR_0016s11980 Populus trichocarpa POPTR_0016s11980 I 0.793
Gorai.012G112000 Gossypium raimondii Gorai.012G112000 I 0.793
GLYMA07G17660 Glycine max GLYMA07G17660 I 0.788
GLYMA18G42530 Glycine max GLYMA18G42530 I 0.788
28288.m000014 Ricinus communis 28288.m000014 I 0.788
cassava30173.valid.m1 Manihot esculenta cassava30173.valid.m1 I 0.788
Ciclev10012285m.g Citrus clementina Ciclev10012285m.g I 0.786
orange1.1g021756m.g Citrus sinensis orange1.1g021756m.g I 0.786
Ca_19327 Cicer arietinum Ca_19327 I 0.783
PRUPE_ppa009103mg Prunus persica PRUPE_ppa009103mg I 0.779
Pm002536 Prunus mume Pm002536 I 0.779
TCM_021750 Theobroma cacao TCM_021750 I 0.777
MDP0000142580 Malus domestica MDP0000142580 I 0.777
SapurV1A.0778s0020 Salix purpurea SapurV1A.0778s0020 I 0.777
SapurV1A.3589s0010 Salix purpurea SapurV1A.3589s0010 I 0.777
POPTR_0006s09860 Populus trichocarpa POPTR_0006s09860 I 0.763
SapurV1A.0001s0790 Salix purpurea SapurV1A.0001s0790 I 0.763
PK27693.1 Cannabis sativa PK27693.1 D 0.762
MDP0000221993 Malus domestica MDP0000221993 I 0.760
cassava23356.valid.m1 Manihot esculenta cassava23356.valid.m1 I 0.758
GLYMA01G27720 Glycine max GLYMA01G27720 I 0.756
GLYMA03G14440 Glycine max GLYMA03G14440 I 0.756
gene18815-v1.0-hybrid Fragaria vesca gene18815-v1.0-hybrid I 0.754
VIT_08s0007g01920 Vitis vinifera VIT_08s0007g01920 I 0.753
29681.m001296 Ricinus communis 29681.m001296 I 0.753
Gorai.007G378300 Gossypium raimondii Gorai.007G378300 I 0.750
PGSC0003DMG400019129 Solanum tuberosum PGSC0003DMG400019129 I 0.749
Gorai.009G093700 Gossypium raimondii Gorai.009G093700 I 0.749
evm.TU.supercontig_112.58 Carica papaya evm.TU.supercontig_112.58 I 0.742
Cla018399 Citrullus lanatus Cla018399 I 0.739
Cucsa.067080 Cucumis sativus Cucsa.067080 I 0.739
Cla004397 Citrullus lanatus Cla004397 I 0.737
GLYMA11G34930 Glycine max GLYMA11G34930 I 0.733
GLYMA18G03430 Glycine max GLYMA18G03430 I 0.733
Solyc10g076820.1 Solanum lycopersicum Solyc10g076820.1 I 0.733
Eucgr.B02800 Eucalyptus grandis Eucgr.B02800 I 0.731
GLYMA02G42140 Glycine max GLYMA02G42140 I 0.726
Lus10018209.g Linum usitatissimum Lus10018209.g I 0.726
Ca_12513 Cicer arietinum Ca_12513 I 0.722
TCM_041672 Theobroma cacao TCM_041672 I 0.720
Ciclev10028910m.g Citrus clementina Ciclev10028910m.g I 0.717
orange1.1g021816m.g Citrus sinensis orange1.1g021816m.g I 0.717
Gorai.006G180900 Gossypium raimondii Gorai.006G180900 I 0.714
Lus10040696.g Linum usitatissimum Lus10040696.g I 0.714
cassava23290.valid.m1 Manihot esculenta cassava23290.valid.m1 I 0.713
MTR_5g081860 Medicago truncatula MTR_5g081860 I 0.712
PK27213.1 Cannabis sativa PK27213.1 D 0.712
Cucsa.164580 Cucumis sativus Cucsa.164580 I 0.711
POPTR_0009s04730 Populus trichocarpa POPTR_0009s04730 I 0.708
GLYMA02G39000 Glycine max GLYMA02G39000 I 0.706
GLYMA14G37050 Glycine max GLYMA14G37050 I 0.706
Cla018243 Citrullus lanatus Cla018243 I 0.700
gene07984-v1.0-hybrid Fragaria vesca gene07984-v1.0-hybrid I 0.696
PGSC0003DMG400020344 Solanum tuberosum PGSC0003DMG400020344 I 0.695
Solyc09g014250.2 Solanum lycopersicum Solyc09g014250.2 I 0.695
POPTR_0001s25590 Populus trichocarpa POPTR_0001s25590 I 0.692
MTR_5g069710 Medicago truncatula MTR_5g069710 I 0.690
MTR_3g462790 Medicago truncatula MTR_3g462790 I 0.688
Ca_15603 Cicer arietinum Ca_15603 I 0.685
Lus10035518.g Linum usitatissimum Lus10035518.g I 0.685
GLYMA11G22960 Glycine max GLYMA11G22960 I 0.681
GLYMA14G06750 Glycine max GLYMA14G06750 I 0.681
Cucsa.176140 Cucumis sativus Cucsa.176140 I 0.681
Thhalv10014410m.g Eutrema salsugineum Thhalv10014410m.g I 0.679
Ca_14247 Cicer arietinum Ca_14247 I 0.675
Pm000529 Prunus mume Pm000529 I 0.675
Aquca_009_00736 Aquilegia coerulea Aquca_009_00736 I 0.675
PGSC0003DMG400030348 Solanum tuberosum PGSC0003DMG400030348 I 0.674
Solyc06g076770.2 Solanum lycopersicum Solyc06g076770.2 I 0.674
SapurV1A.0709s0190 Salix purpurea SapurV1A.0709s0190 I 0.670
Cla013553 Citrullus lanatus Cla013553 I 0.667
Cucsa.139090 Cucumis sativus Cucsa.139090 I 0.667
PRUPE_ppa009072mg Prunus persica PRUPE_ppa009072mg I 0.666
Aquca_004_00289 Aquilegia coerulea Aquca_004_00289 I 0.666
GSMUA_Achr8G02380_001 Musa acuminata GSMUA_Achr8G02380_001 I 0.662
SapurV1A.0041s0720 Salix purpurea SapurV1A.0041s0720 I 0.662
SapurV1A.0164s0380 Salix purpurea SapurV1A.0164s0380 I 0.662
Thhalv10014270m.g Eutrema salsugineum Thhalv10014270m.g I 0.662