fgenesh2_kg.6__825__AT5G08520.1 (Arabidopsis lyrata)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 fgenesh2_kg.6__825__AT5G08520.1 T270830_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SRM1
M02307_2.00 		Arabidopsis thaliana
NNHNATCNN
NNGATNDNN		 PBM
Weirauch et al.(2014)
pTH7080 		0.904 0.989
SRM1
M07121_2.00 		Arabidopsis thaliana
YCTTATCYWHW
WDWRGATAAGR		 Dap-seq
OMalley et al.(2016)
At5g08520_colamp_a 		0.904 0.989
SRM1
M07122_2.00 		Arabidopsis thaliana
YCTTATCYWHWWH
DWWDWRGATAAGR		 Dap-seq
OMalley et al.(2016)
At5g08520_col_b 		0.904 0.989
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
fgenesh2_kg.6__825__AT5G08520.1 Myb 9 58
fgenesh2_kg.6__825__AT5G08520.1 Myb 119 164

Links

Other Myb/SANT family TFs
Other Arabidopsis lyrata TFs

47 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
SRM1 Arabidopsis thaliana AT5G08520 D 0.904
Bostr.13129s0103 Boechera stricta Bostr.13129s0103 I 0.891
Thhalv10014203m.g Eutrema salsugineum Thhalv10014203m.g I 0.888
Cagra.1365s0066 Capsella grandiflora Cagra.1365s0066 I 0.848
Carubv10001525m.g Capsella rubella Carubv10001525m.g I 0.848
Bo9g174380 Brassica oleracea Bo9g174380 I 0.841
Bra009346 Brassica rapa Bra009346 I 0.820
Bra028654 Brassica rapa Bra028654 I 0.802
Bo3g004970 Brassica oleracea Bo3g004970 I 0.798
Bo2g009130 Brassica oleracea Bo2g009130 I 0.787
Bostr.10199s0068 Boechera stricta Bostr.10199s0068 I 0.745
30131.m007263 Ricinus communis 30131.m007263 I 0.744
Gorai.005G212900 Gossypium raimondii Gorai.005G212900 I 0.730
Gorai.013G067600 Gossypium raimondii Gorai.013G067600 I 0.730
GLYMA07G28310 Glycine max GLYMA07G28310 I 0.729
GLYMA20G01450 Glycine max GLYMA20G01450 I 0.729
SapurV1A.0234s0050 Salix purpurea SapurV1A.0234s0050 I 0.729
Ciclev10032259m.g Citrus clementina Ciclev10032259m.g I 0.728
orange1.1g022439m.g Citrus sinensis orange1.1g022439m.g I 0.728
Eucgr.G02591 Eucalyptus grandis Eucgr.G02591 I 0.726
GSMUA_Achr9G20620_001 Musa acuminata GSMUA_Achr9G20620_001 I 0.724
PRUPE_ppa009396mg Prunus persica PRUPE_ppa009396mg I 0.723
Gorai.012G135600 Gossypium raimondii Gorai.012G135600 I 0.720
GSMUA_Achr1G17730_001 Musa acuminata GSMUA_Achr1G17730_001 I 0.719
TCM_007672 Theobroma cacao TCM_007672 I 0.719
cassava18614.valid.m1 Manihot esculenta cassava18614.valid.m1 I 0.719
Gorai.008G147400 Gossypium raimondii Gorai.008G147400 I 0.719
GLYMA08G40020 Glycine max GLYMA08G40020 I 0.712
GLYMA18G18140 Glycine max GLYMA18G18140 I 0.712
Cla020348 Citrullus lanatus Cla020348 I 0.711
Thhalv10005383m.g Eutrema salsugineum Thhalv10005383m.g I 0.711
GSMUA_Achr9G23760_001 Musa acuminata GSMUA_Achr9G23760_001 I 0.710
VIT_10s0071g00660 Vitis vinifera VIT_10s0071g00660 I 0.708
Cla009230 Citrullus lanatus Cla009230 I 0.708
Cucsa.013870 Cucumis sativus Cucsa.013870 I 0.708
Aquca_035_00057 Aquilegia coerulea Aquca_035_00057 I 0.703
evm.TU.supercontig_138.5 Carica papaya evm.TU.supercontig_138.5 I 0.703
Cucsa.280970 Cucumis sativus Cucsa.280970 I 0.698
PK13672.1 Cannabis sativa PK13672.1 I 0.686
Pm006046 Prunus mume Pm006046 I 0.685
SapurV1A.0333s0040 Salix purpurea SapurV1A.0333s0040 I 0.681
Carubv10003231m.g Capsella rubella Carubv10003231m.g I 0.673
Ca_19000 Cicer arietinum Ca_19000 I 0.672
Cagra.25796s0001 Capsella grandiflora Cagra.25796s0001 I 0.672
Bo7g097510 Brassica oleracea Bo7g097510 I 0.670
Bra009699 Brassica rapa Bra009699 I 0.670
PGSC0003DMG400025303 Solanum tuberosum PGSC0003DMG400025303 I 0.664