CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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LPERR02G23410
(
Leersia perrieri
)
Myb/SANT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00249 (Myb_DNA-binding)
IPR014778
LPERR02G23410
T273674_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
MYB58
M07005_2.00
Arabidopsis thaliana
NNYYYACCWAMCHHH
DDDGKTWGGTRRRNN
Dap-seq
OMalley et al.(2016)
MYB58_col_a
0.754
0.785
MYB58
M07006_2.00
Arabidopsis thaliana
HNNYHYACCWAMCHHHNNNNH
DNNNNDDDGKTWGGTRDRNND
Dap-seq
OMalley et al.(2016)
MYB58_colamp_a
0.754
0.785
AtMYB10
M07081_2.00
Arabidopsis thaliana
YYYACCWAMCHHHHNH
DNDDDDGKTWGGTRRR
Dap-seq
OMalley et al.(2016)
MYB10_col_a
0.751
0.742
AtMYB10
M07082_2.00
Arabidopsis thaliana
NYYYACCWAMCHHH
DDDGKTWGGTRRRN
Dap-seq
OMalley et al.(2016)
MYB10_colamp_a
0.751
0.742
ATMYB13
M06999_2.00
Arabidopsis thaliana
HYCACCWACCHHHNH
DNDDDGGTWGGTGRD
Dap-seq
OMalley et al.(2016)
MYB13_col_a
0.727
0.763
ATMYB13
M07000_2.00
Arabidopsis thaliana
BYCACCWACCHHHNNHNN
NNDNNDDDGGTWGGTGRV
Dap-seq
OMalley et al.(2016)
MYB13_colamp_a
0.727
0.763
MYB107
M07061_2.00
Arabidopsis thaliana
NDDWDBBYYACCWAMYHH
DDRKTWGGTRRVVHWHHN
Dap-seq
OMalley et al.(2016)
MYB107_col_a
0.721
0.774
MYB107
M07062_2.00
Arabidopsis thaliana
WNBYYYACCWAMYH
DRKTWGGTRRRVNW
Dap-seq
OMalley et al.(2016)
MYB107_colamp_a
0.721
0.774
PK28187.1
M01286_2.00
Cannabis sativa
TACCTACC
GGTAGGTA
PBM
Lambert et al.(2019)
pTH11305
0.680
0.731
MYB15
M07084_2.00
Arabidopsis thaliana
NNNHNNHHNHHYCACCWAMYH
DRKTWGGTGRDDNDDNNDNNN
Dap-seq
OMalley et al.(2016)
ATY19_col_a
0.674
0.753
MYB15
M02699_2.00
Arabidopsis thaliana
CCACCTACCSBBG
CVVSGGTAGGTGG
SELEX
Mathelier et al.(2014)
MA0574.1
0.674
0.753
MYB15
M11041_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ATMYB15_01
0.674
0.753
MYB15
M11042_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ATMYB15_Q2
0.674
0.753
MYB39
M07106_2.00
Arabidopsis thaliana
NYYYACCTAMYWHH
DDWRKTAGGTRRRN
Dap-seq
OMalley et al.(2016)
MYB39_col_a
0.668
0.699
MYB39
M07107_2.00
Arabidopsis thaliana
NYYYACCWAMYWHHHHHHHNH
DNDDDDDDDWRKTWGGTRRRN
Dap-seq
OMalley et al.(2016)
MYB39_colamp_a
0.668
0.699
MYB92
M07123_2.00
Arabidopsis thaliana
NHHACCTAMY
RKTAGGTDDN
Dap-seq
OMalley et al.(2016)
MYB92_100ng20cy_b
0.664
0.731
MYB92
M07124_2.00
Arabidopsis thaliana
NNNNWNNYYYACCWAMYHH
DDRKTWGGTRRRNNWNNNN
Dap-seq
OMalley et al.(2016)
MYB92_colamp_a
0.664
0.731
MYB106
M11040_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AT3G01140_01
0.661
0.710
For this family, TFs with SR scores >
0.661
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
LPERR02G23410.1
Myb
16
63
RGSWTPQEDMRLIAYIQKHGHANWRALPKQAGLLRCGKSCRLRWINYL
LPERR02G23410.1
Myb
69
114
RGNFTADEEETIIKLHGLLGNKWSKIASCLPGRTDNEIKNVWNTHL
Links
Other
Myb/SANT
family TFs
Other
Leersia perrieri
TFs
653 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy