CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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MLOC_5837
(
Hordeum vulgare
)
Myb/SANT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00249 (Myb_DNA-binding)
IPR014778
MLOC_5837
T274523_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
PHR1
M02329_2.00
Oryza sativa
NWKATNCBNN
NNVGNATMWN
PBM
Weirauch et al.(2014)
pTH7755
0.714
0.787
PHL6
M02295_2.00
Arabidopsis thaliana
NNWKATNCBN
NVGNATMWNN
PBM
Weirauch et al.(2014)
pTH7071
0.680
0.723
PHL6
M07083_2.00
Arabidopsis thaliana
NDGAAAACH
DGTTTTCHN
Dap-seq
OMalley et al.(2016)
At3g13040_col_b
0.680
0.723
AT2G20400
M07046_2.00
Arabidopsis thaliana
NDNNDNHNNVDDDNNNHAWRGMATATTCB
VGAATATKCYWTDNNNHHHBNNDNHNNHN
Dap-seq
OMalley et al.(2016)
AT2G20400_col_a
0.677
0.766
AT2G20400
M07047_2.00
Arabidopsis thaliana
RDRGAATATTCBNWD
HWNVGAATATTCYHY
Dap-seq
OMalley et al.(2016)
AT2G20400_colamp_a
0.677
0.766
PHL7
M02292_2.00
Arabidopsis thaliana
NWGATDCBNN
NNVGHATCWN
PBM
Weirauch et al.(2014)
pTH7253
0.661
0.745
PK10342.1
M02351_2.00
Cannabis sativa
WAGATKCS
SGMATCTW
PBM
Weirauch et al.(2014)
pTH9489
0.661
0.745
PHL7
M07040_2.00
Arabidopsis thaliana
DRNAKATTCBNHNNN
NNNDNVGAATMTNYH
Dap-seq
OMalley et al.(2016)
At2g01060_colamp_a
0.661
0.745
PHL7
M07041_2.00
Arabidopsis thaliana
VGAATATTCBNHH
DDNVGAATATTCB
Dap-seq
OMalley et al.(2016)
At2g01060_col
0.661
0.745
For this family, TFs with SR scores >
0.661
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
MLOC_5837.1
Myb
231
282
RMRWSLELHERFVEALKKLGGPEKATPKGVLNLMKVEGLTIFHVKSHLQNYR
MLOC_5837.2
Myb
163
214
RMRWSLELHERFVEALKKLGGPEKATPKGVLNLMKVEGLTIFHVKSHLQNYR
MLOC_5837.3
Myb
163
214
RMRWSLELHERFVEALKKLGGPEKATPKGVLNLMKVEGLTIFHVKSHLQNYR
MLOC_5837.4
Myb
163
214
RMRWSLELHERFVEALKKLGGPEKATPKGVLNLMKVEGLTIFHVKSHLQNYR
Links
Other
Myb/SANT
family TFs
Other
Hordeum vulgare
TFs
233 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
F775_05042
Aegilops tauschii
F775_05042
I
0.901
Traes_6BS_00D311B94
Triticum aestivum
Traes_6BS_00D311B94
I
0.901
Traes_6DS_20D189350
Triticum aestivum
Traes_6DS_20D189350
I
0.901
Traes_6AS_DBE4E3146
Triticum aestivum
Traes_6AS_DBE4E3146
I
0.886
BRADI3G03538
Brachypodium distachyon
BRADI3G03538
I
0.834
BGIOSGA023563
Oryza indica
BGIOSGA023563
I
0.813
F775_29452
Aegilops tauschii
F775_29452
I
0.813
MLOC_54829
Hordeum vulgare
MLOC_54829
I
0.813
OB06G34350
Oryza brachyantha
OB06G34350
I
0.813
ORGLA06G0222600
Oryza glaberrima
ORGLA06G0222600
I
0.813
OS06G0703900
Oryza sativa
OS06G0703900
I
0.813
Si006354m.g
Setaria italica
Si006354m.g
I
0.813
Si017191m.g
Setaria italica
Si017191m.g
I
0.813
Traes_7AL_D45376F32
Triticum aestivum
Traes_7AL_D45376F32
I
0.813
Traes_7BL_09DD5A1DC
Triticum aestivum
Traes_7BL_09DD5A1DC
I
0.813
Traes_7DL_090D0E08E
Triticum aestivum
Traes_7DL_090D0E08E
I
0.813
TRIUR3_32904
Triticum urartu
TRIUR3_32904
I
0.813
Pavir.Aa03223
Panicum virgatum
Pavir.Aa03223
I
0.813
Pavir.Db00228
Panicum virgatum
Pavir.Db00228
I
0.813
Pavir.J14911
Panicum virgatum
Pavir.J14911
I
0.813
Sb10g029200
Sorghum bicolor
Sb10g029200
I
0.807
Pavir.J27649
Panicum virgatum
Pavir.J27649
I
0.795
GSMUA_Achr7G15740_001
Musa acuminata
GSMUA_Achr7G15740_001
I
0.766
BRADI1G34470
Brachypodium distachyon
BRADI1G34470
I
0.764
GRMZM2G010920
Zea mays
GRMZM2G010920
I
0.764
PHR3
Oryza indica
BGIOSGA007162
I
0.758
GSMUA_Achr10G23260_001
Musa acuminata
GSMUA_Achr10G23260_001
I
0.758
OB02G12880
Oryza brachyantha
OB02G12880
I
0.758
OBART02G03200
Oryza barthii
OBART02G03200
I
0.758
OGLUM02G03100
Oryza glumaepatula
OGLUM02G03100
I
0.758
OMERI02G03860
Oryza meridionalis
OMERI02G03860
I
0.758
ONIVA02G03010
Oryza nivara
ONIVA02G03010
I
0.758
OPUNC02G02530
Oryza punctata
OPUNC02G02530
I
0.758
ORGLA02G0030200
Oryza glaberrima
ORGLA02G0030200
I
0.758
ORUFI02G03130
Oryza rufipogon
ORUFI02G03130
I
0.758
PHR3
Oryza sativa
OS02G0139000
I
0.758
PDK_20s1523411g004
Phoenix dactylifera
PDK_20s1523411g004
I
0.758
PK01823.1
Cannabis sativa
PK01823.1
I
0.745
LPERR02G03030
Leersia perrieri
LPERR02G03030
I
0.740
evm.TU.supercontig_10.14
Carica papaya
evm.TU.supercontig_10.14
I
0.739
Gorai.011G001500
Gossypium raimondii
Gorai.011G001500
I
0.739
BGIOSGA005373
Oryza indica
BGIOSGA005373
I
0.735
OB02G43730
Oryza brachyantha
OB02G43730
I
0.735
OLONG_010553
Oryza longistaminata
OLONG_010553
I
0.735
ORUFI02G38560
Oryza rufipogon
ORUFI02G38560
I
0.735
POPTR_0007s15110
Populus trichocarpa
POPTR_0007s15110
I
0.724
SapurV1A.0703s0050
Salix purpurea
SapurV1A.0703s0050
I
0.724
POPTR_0014s00280
Populus trichocarpa
POPTR_0014s00280
I
0.718
VIT_09s0054g01620
Vitis vinifera
VIT_09s0054g01620
I
0.718
PHR1
Oryza indica
BGIOSGA012553
I
0.714
LPERR03G14050
Leersia perrieri
LPERR03G14050
I
0.714
OB03G25800
Oryza brachyantha
OB03G25800
I
0.714
OLONG_005622
Oryza longistaminata
OLONG_005622
I
0.714
OMERI03G14370
Oryza meridionalis
OMERI03G14370
I
0.714
ONIVA03G17050
Oryza nivara
ONIVA03G17050
I
0.714
OPUNC03G15590
Oryza punctata
OPUNC03G15590
I
0.714
ORGLA03G0154000
Oryza glaberrima
ORGLA03G0154000
I
0.714
PHR1
Oryza sativa
OS03G0329900
D
0.714
Solyc06g008200.2
Solanum lycopersicum
Solyc06g008200.2
I
0.714
Aquca_017_00793
Aquilegia coerulea
Aquca_017_00793
I
0.714
Eucgr.A01323
Eucalyptus grandis
Eucgr.A01323
I
0.714
evm.TU.supercontig_87.3
Carica papaya
evm.TU.supercontig_87.3
I
0.714
Bo4g025360
Brassica oleracea
Bo4g025360
I
0.713
Bra004973
Brassica rapa
Bra004973
I
0.713
Sb04g003140
Sorghum bicolor
Sb04g003140
I
0.712
PRUPE_ppa005159mg
Prunus persica
PRUPE_ppa005159mg
I
0.706
Pm013132
Prunus mume
Pm013132
I
0.706
Eucgr.F04055
Eucalyptus grandis
Eucgr.F04055
I
0.706
gene05518-v1.0-hybrid
Fragaria vesca
gene05518-v1.0-hybrid
I
0.706
Gorai.011G291200
Gossypium raimondii
Gorai.011G291200
I
0.704
BRADI1G63530
Brachypodium distachyon
BRADI1G63530
I
0.703
LPERR02G30520
Leersia perrieri
LPERR02G30520
I
0.703
Solyc09g072830.2
Solanum lycopersicum
Solyc09g072830.2
I
0.696
mgf005047m
Mimulus guttatus
mgf005047m
I
0.696
BRADI5G20520
Brachypodium distachyon
BRADI5G20520
I
0.695
PHR2
Oryza indica
BGIOSGA025605
I
0.692
BRADI1G28920
Brachypodium distachyon
BRADI1G28920
I
0.692
F775_09823
Aegilops tauschii
F775_09823
I
0.692
GRMZM2G162409
Zea mays
GRMZM2G162409
I
0.692
LPERR07G10540
Leersia perrieri
LPERR07G10540
I
0.692
OB07G18720
Oryza brachyantha
OB07G18720
I
0.692
OBART07G12530
Oryza barthii
OBART07G12530
I
0.692
OGLUM07G11980
Oryza glumaepatula
OGLUM07G11980
I
0.692
OLONG_021629
Oryza longistaminata
OLONG_021629
I
0.692
OMERI07G09960
Oryza meridionalis
OMERI07G09960
I
0.692
ONIVA07G10340
Oryza nivara
ONIVA07G10340
I
0.692
OPUNC07G11150
Oryza punctata
OPUNC07G11150
I
0.692
ORGLA07G0105500
Oryza glaberrima
ORGLA07G0105500
I
0.692
ORUFI07G12650
Oryza rufipogon
ORUFI07G12650
I
0.692
PHR2
Oryza sativa
OS07G0438800
I
0.692
Sb02g010520
Sorghum bicolor
Sb02g010520
I
0.692
Si029945m.g
Setaria italica
Si029945m.g
I
0.692
Traes_3AS_6EEB8D2B2
Triticum aestivum
Traes_3AS_6EEB8D2B2
I
0.692
TRAES3BF104900050CFD_g
Triticum aestivum
TRAES3BF104900050CFD_g
I
0.692
Pavir.Ba02554
Panicum virgatum
Pavir.Ba02554
I
0.692
Pavir.Bb01566
Panicum virgatum
Pavir.Bb01566
I
0.692
TCM_027630
Theobroma cacao
TCM_027630
I
0.690
Ciclev10030185m.g
Citrus clementina
Ciclev10030185m.g
I
0.690
Gorai.009G120900
Gossypium raimondii
Gorai.009G120900
I
0.690
orange1.1g011006m.g
Citrus sinensis
orange1.1g011006m.g
I
0.690
BRADI3G55120
Brachypodium distachyon
BRADI3G55120
I
0.686
Traes_6BL_5D8EE6802
Triticum aestivum
Traes_6BL_5D8EE6802
I
0.686
TRIUR3_02291
Triticum urartu
TRIUR3_02291
I
0.686
Ciclev10011992m.g
Citrus clementina
Ciclev10011992m.g
I
0.686
orange1.1g017464m.g
Citrus sinensis
orange1.1g017464m.g
I
0.686
PRUPE_ppa023008mg
Prunus persica
PRUPE_ppa023008mg
I
0.682
TCM_039819
Theobroma cacao
TCM_039819
I
0.682
VIT_09s0070g00410
Vitis vinifera
VIT_09s0070g00410
I
0.682
MDP0000241055
Malus domestica
MDP0000241055
I
0.682
MDP0000773970
Malus domestica
MDP0000773970
I
0.682
PHL6
Arabidopsis thaliana
AT3G13040
D
0.680
AT2G20400
Arabidopsis thaliana
AT2G20400
D
0.677
PGSC0003DMG400023467
Solanum tuberosum
PGSC0003DMG400023467
I
0.675
Solyc05g055940.2
Solanum lycopersicum
Solyc05g055940.2
I
0.675
Cla003565
Citrullus lanatus
Cla003565
I
0.675
29680.m001711
Ricinus communis
29680.m001711
I
0.675
30169.m006598
Ricinus communis
30169.m006598
I
0.675
cassava22661.valid.m1
Manihot esculenta
cassava22661.valid.m1
I
0.675
cassava35979.valid.m1
Manihot esculenta
cassava35979.valid.m1
I
0.675
cassava35980.valid.m1
Manihot esculenta
cassava35980.valid.m1
I
0.675
cassava39270.m1
Manihot esculenta
cassava39270.m1
I
0.675
cassava44101.valid.m1
Manihot esculenta
cassava44101.valid.m1
I
0.675
Cucsa.027530
Cucumis sativus
Cucsa.027530
I
0.675
Lus10035705.g
Linum usitatissimum
Lus10035705.g
I
0.675
PDK_20s1301376g001
Phoenix dactylifera
PDK_20s1301376g001
I
0.675
BGIOSGA008875
Oryza indica
BGIOSGA008875
I
0.672
F775_09615
Aegilops tauschii
F775_09615
I
0.672
F775_26343
Aegilops tauschii
F775_26343
I
0.672
GRMZM2G374986
Zea mays
GRMZM2G374986
I
0.672
LPERR02G23680
Leersia perrieri
LPERR02G23680
I
0.672
LPERR04G19690
Leersia perrieri
LPERR04G19690
I
0.672
MLOC_14844
Hordeum vulgare
MLOC_14844
I
0.672
MLOC_5585
Hordeum vulgare
MLOC_5585
I
0.672
OB02G36270
Oryza brachyantha
OB02G36270
I
0.672
OB04G30960
Oryza brachyantha
OB04G30960
I
0.672
OBART02G29100
Oryza barthii
OBART02G29100
I
0.672
OGLUM02G29720
Oryza glumaepatula
OGLUM02G29720
I
0.672
ONIVA02G31870
Oryza nivara
ONIVA02G31870
I
0.672
OPUNC02G26700
Oryza punctata
OPUNC02G26700
I
0.672
OPUNC04G21550
Oryza punctata
OPUNC04G21550
I
0.672
ORGLA02G0249400
Oryza glaberrima
ORGLA02G0249400
I
0.672
ORUFI02G30700
Oryza rufipogon
ORUFI02G30700
I
0.672
OS02G0700300
Oryza sativa
OS02G0700300
I
0.672
Sb04g030830
Sorghum bicolor
Sb04g030830
I
0.672
Si018049m.g
Setaria italica
Si018049m.g
I
0.672
Traes_4AS_7220D33B3
Triticum aestivum
Traes_4AS_7220D33B3
I
0.672
Traes_4DL_2C27C34AF
Triticum aestivum
Traes_4DL_2C27C34AF
I
0.672
Traes_6AL_72D2B7C35
Triticum aestivum
Traes_6AL_72D2B7C35
I
0.672
Traes_6DL_EAF038D23
Triticum aestivum
Traes_6DL_EAF038D23
I
0.672
mgf011847m
Mimulus guttatus
mgf011847m
I
0.672
Pavir.Aa00783
Panicum virgatum
Pavir.Aa00783
I
0.672
Pavir.Ab02790
Panicum virgatum
Pavir.Ab02790
I
0.672
MLOC_60198
Hordeum vulgare
MLOC_60198
I
0.670
GLYMA18G43130
Glycine max
GLYMA18G43130
I
0.669
Lus10037296.g
Linum usitatissimum
Lus10037296.g
I
0.669
MLOC_65279
Hordeum vulgare
MLOC_65279
I
0.666
GLYMA19G43690
Glycine max
GLYMA19G43690
I
0.662
MTR_1g080330
Medicago truncatula
MTR_1g080330
I
0.662
PRUPE_ppa005708mg
Prunus persica
PRUPE_ppa005708mg
I
0.662
VIT_08s0007g06310
Vitis vinifera
VIT_08s0007g06310
I
0.662
Ca_03781
Cicer arietinum
Ca_03781
I
0.662
Pm003600
Prunus mume
Pm003600
I
0.662
Aquca_009_00165
Aquilegia coerulea
Aquca_009_00165
N
0.662
Aquca_012_00204
Aquilegia coerulea
Aquca_012_00204
N
0.662
MDP0000132340
Malus domestica
MDP0000132340
I
0.662
PK16227.1
Cannabis sativa
PK16227.1
I
0.662
LjSGA_026114.1
Lotus japonicus
LjSGA_026114.1
I
0.662
AMTR_s00061p00095620
Amborella trichopoda
AMTR_s00061p00095620
I
0.661
PHL7
Arabidopsis thaliana
AT2G01060
D
0.661
BGIOSGA030474
Oryza indica
BGIOSGA030474
I
0.661
Bo7g077990
Brassica oleracea
Bo7g077990
I
0.661
Bra024909
Brassica rapa
Bra024909
I
0.661
BRADI5G25320
Brachypodium distachyon
BRADI5G25320
I
0.661
fgenesh2_kg.5__3__AT2G01060.1
Arabidopsis lyrata
fgenesh2_kg.5__3__AT2G01060.1
I
0.661
GLYMA09G02040
Glycine max
GLYMA09G02040
I
0.661
GLYMA15G12940
Glycine max
GLYMA15G12940
I
0.661
GRMZM2G124495
Zea mays
GRMZM2G124495
I
0.661
GRMZM2G173943
Zea mays
GRMZM2G173943
I
0.661
GSMUA_Achr3G28410_001
Musa acuminata
GSMUA_Achr3G28410_001
I
0.661
LPERR09G03210
Leersia perrieri
LPERR09G03210
I
0.661
MLOC_52271
Hordeum vulgare
MLOC_52271
I
0.661
MTR_2g027860
Medicago truncatula
MTR_2g027860
I
0.661
OB09G12870
Oryza brachyantha
OB09G12870
I
0.661
OBART09G04530
Oryza barthii
OBART09G04530
I
0.661
OGLUM09G05280
Oryza glumaepatula
OGLUM09G05280
I
0.661
ONIVA09G04730
Oryza nivara
ONIVA09G04730
I
0.661
OPUNC09G03970
Oryza punctata
OPUNC09G03970
I
0.661
ORGLA09G0034900
Oryza glaberrima
ORGLA09G0034900
I
0.661
ORUFI09G05110
Oryza rufipogon
ORUFI09G05110
I
0.661
OS09G0299200
Oryza sativa
OS09G0299200
I
0.661
PGSC0003DMG400007401
Solanum tuberosum
PGSC0003DMG400007401
I
0.661
PGSC0003DMG400008786
Solanum tuberosum
PGSC0003DMG400008786
I
0.661
POPTR_0006s00290
Populus trichocarpa
POPTR_0006s00290
I
0.661
POPTR_0016s00310
Populus trichocarpa
POPTR_0016s00310
I
0.661
PRUPE_ppa009121mg
Prunus persica
PRUPE_ppa009121mg
I
0.661
Sb02g020700
Sorghum bicolor
Sb02g020700
I
0.661
Si030592m.g
Setaria italica
Si030592m.g
I
0.661
Solyc11g022470.1
Solanum lycopersicum
Solyc11g022470.1
I
0.661
Solyc11g067280.1
Solanum lycopersicum
Solyc11g067280.1
I
0.661
TCM_030480
Theobroma cacao
TCM_030480
I
0.661
VIT_00s0475g00040
Vitis vinifera
VIT_00s0475g00040
I
0.661
Ca_07939
Cicer arietinum
Ca_07939
I
0.661
Cla014593
Citrullus lanatus
Cla014593
I
0.661
Pm009657
Prunus mume
Pm009657
I
0.661
29805.m001544
Ricinus communis
29805.m001544
I
0.661
cassava13406.valid.m1
Manihot esculenta
cassava13406.valid.m1
I
0.661
cassava13407.valid.m1
Manihot esculenta
cassava13407.valid.m1
I
0.661
cassava36260.valid.m1
Manihot esculenta
cassava36260.valid.m1
I
0.661
cassava36261.valid.m1
Manihot esculenta
cassava36261.valid.m1
I
0.661
Cucsa.044390
Cucumis sativus
Cucsa.044390
I
0.661
mgf002744m
Mimulus guttatus
mgf002744m
I
0.661
mgf003647m
Mimulus guttatus
mgf003647m
I
0.661
mgf006394m
Mimulus guttatus
mgf006394m
I
0.661
mgf007291m
Mimulus guttatus
mgf007291m
I
0.661
mgf012689m
Mimulus guttatus
mgf012689m
I
0.661
mgf014369m
Mimulus guttatus
mgf014369m
I
0.661
mgf015945m
Mimulus guttatus
mgf015945m
I
0.661
Bostr.7903s0063
Boechera stricta
Bostr.7903s0063
I
0.661
Cagra.2315s0003
Capsella grandiflora
Cagra.2315s0003
I
0.661
Carubv10017769m.g
Capsella rubella
Carubv10017769m.g
I
0.661
Ciclev10015893m.g
Citrus clementina
Ciclev10015893m.g
I
0.661
evm.TU.supercontig_27.185
Carica papaya
evm.TU.supercontig_27.185
I
0.661
gene19867-v1.0-hybrid
Fragaria vesca
gene19867-v1.0-hybrid
I
0.661
MDP0000323119
Malus domestica
MDP0000323119
I
0.661
orange1.1g020124m.g
Citrus sinensis
orange1.1g020124m.g
I
0.661
Pavir.Ba02820
Panicum virgatum
Pavir.Ba02820
I
0.661
Pavir.Bb01632
Panicum virgatum
Pavir.Bb01632
I
0.661
SapurV1A.0089s0170
Salix purpurea
SapurV1A.0089s0170
I
0.661
SapurV1A.0220s0460
Salix purpurea
SapurV1A.0220s0460
I
0.661
Thhalv10000981m.g
Eutrema salsugineum
Thhalv10000981m.g
I
0.661
PK10342.1
Cannabis sativa
PK10342.1
D
0.661
PDK_20s1369041g001
Phoenix dactylifera
PDK_20s1369041g001
I
0.661