MTR_3g052430 (Medicago truncatula)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 MTR_3g052430 T274760_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Gam1
M02703_2.00 		Hordeum vulgare
NVYAACSGMC
GKCSGTTRBN		 SELEX
Mathelier et al.(2014)
MA0034.1 		0.806 0.837
Gam1
M11061_2.00 		Hordeum vulgare
YAACSRHM
KDYSGTTR		 Transfac
Matys et al.(2006)
P$GAMYB_01 		0.806 0.837
GAM1_ORYSI
M11055_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$GAMYB_Q2 		0.806 0.837
MYB33
M02306_2.00 		Arabidopsis thaliana
HAACNRHHNN
NNDDYNGTTD		 PBM
Weirauch et al.(2014)
pTH8204 		0.776 0.848
MYB33
M07120_2.00 		Arabidopsis thaliana
NTAACYGWHWH
DWDWCRGTTAN		 Dap-seq
OMalley et al.(2016)
MYB33_col_a 		0.776 0.848
MYB101
M07051_2.00 		Arabidopsis thaliana
NWHHNWAACCGWWHH
DDWWCGGTTWNDDWN		 Dap-seq
OMalley et al.(2016)
MYB101_col_a 		0.773 0.804
MYB101
M07052_2.00 		Arabidopsis thaliana
DHHHVTAACYGWHWN
NWDWCRGTTABDDDH		 Dap-seq
OMalley et al.(2016)
MYB101_colamp_a 		0.773 0.804
myb.Ph3
M02704_2.00 		Petunia x hybrida
WAACNGTYW
WRACNGTTW		 SELEX
Mathelier et al.(2014)
MA0054.1 		0.762 0.815
myb.Ph3
M11070_2.00 		Petunia x hybrida
RTAACSGTTTYHW
WDRAAACSGTTAY		 Transfac
Matys et al.(2006)
P$MYBPH3_01 		0.762 0.815
myb.Ph3
M11071_2.00 		Petunia x hybrida
STAACTAACTHHH
DDDAGTTAGTTAS		 Transfac
Matys et al.(2006)
P$MYBPH3_02 		0.762 0.815
Q9FR42_TOBAC
M11076_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MYBAS1_01 		0.761 0.815
ATMYB65
M01076_2.00 		Arabidopsis thaliana
HAACNRHHN
NDDYNGTTD		 PBM
Sullivan et al.(2014)
pTH7084 		0.758 0.837
ATMYB65
M07076_2.00 		Arabidopsis thaliana
DHHNTAACBGHMW
WKDCVGTTANDDH		 Dap-seq
OMalley et al.(2016)
MYB65_col200_a 		0.758 0.837
ATMYB65
M07077_2.00 		Arabidopsis thaliana
NTAACYGHMWHNDHN
NDHNDWKDCRGTTAN		 Dap-seq
OMalley et al.(2016)
MYB65_colamp_a 		0.758 0.837
AtMYB81
M07049_2.00 		Arabidopsis thaliana
VTAACNGHWWH
DWWDCNGTTAB		 Dap-seq
OMalley et al.(2016)
MYB81_col_a 		0.684 0.761
AtMYB81
M07050_2.00 		Arabidopsis thaliana
DHHNYAACBGHWWH
DWWDCVGTTRNDDH		 Dap-seq
OMalley et al.(2016)
MYB81_colamp_a 		0.684 0.761
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
AES70374 Myb 43 90
AES70374 Myb 96 140

Links

Other Myb/SANT family TFs
Other Medicago truncatula TFs

258 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
fgenesh1_pm.C_scaffold_8000473 Arabidopsis lyrata fgenesh1_pm.C_scaffold_8000473 N
AT5G42700 Arabidopsis thaliana AT5G42700 N
PK25650.1 Cannabis sativa PK25650.1 N
Ca_01536 Cicer arietinum Ca_01536 N
Cla016258 Citrullus lanatus Cla016258 N
Cucsa.232760 Cucumis sativus Cucsa.232760 N
GLYMA06G04200 Glycine max GLYMA06G04200 N
GLYMA04G04030 Glycine max GLYMA04G04030 N
Gorai.002G131600 Gossypium raimondii Gorai.002G131600 N
Lus10006483.g Linum usitatissimum Lus10006483.g N
MTR_3g101520 Medicago truncatula MTR_3g101520 N
POPTR_0009s10590 Populus trichocarpa POPTR_0009s10590 N
Pm005257 Prunus mume Pm005257 N
SapurV1A.0361s0280 Salix purpurea SapurV1A.0361s0280 N
PGSC0003DMG400025792 Solanum tuberosum PGSC0003DMG400025792 N
TCM_033870 Theobroma cacao TCM_033870 N
VIT_03s0063g00620 Vitis vinifera VIT_03s0063g00620 N