CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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MTR_5g488160
(
Medicago truncatula
)
Myb/SANT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00249 (Myb_DNA-binding)
IPR014778
MTR_5g488160
T274891_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
PK17526.1
M02353_2.00
Cannabis sativa
NNTTATCCAN
NTGGATAANN
PBM
Weirauch et al.(2014)
pTH9588
0.676
0.702
PK23829.1
M02355_2.00
Cannabis sativa
VTTATCCD
HGGATAAB
PBM
Weirauch et al.(2014)
pTH9592
0.665
0.681
For this family, TFs with SR scores >
0.661
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
KEH28347
Myb
271
318
KGHWTEDEHKLFLKGLKKHGKGCWKDISKEFVVTKTPTQIASHAQKYF
Links
Other
Myb/SANT
family TFs
Other
Medicago truncatula
TFs
57 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
MTR_5g088060
Medicago truncatula
MTR_5g088060
I
0.909
MTR_5g088010
Medicago truncatula
MTR_5g088010
N
0.758
MTR_5g027570
Medicago truncatula
MTR_5g027570
N
0.729
Ca_17598
Cicer arietinum
Ca_17598
I
0.697
evm.TU.supercontig_13.246
Carica papaya
evm.TU.supercontig_13.246
I
0.687
evm.TU.supercontig_13.248
Carica papaya
evm.TU.supercontig_13.248
I
0.687
MLOC_20277
Hordeum vulgare
MLOC_20277
I
0.676
PGSC0003DMG400001913
Solanum tuberosum
PGSC0003DMG400001913
I
0.676
PGSC0003DMG400024572
Solanum tuberosum
PGSC0003DMG400024572
I
0.676
PGSC0003DMG400033030
Solanum tuberosum
PGSC0003DMG400033030
I
0.676
POPTR_0008s19610
Populus trichocarpa
POPTR_0008s19610
I
0.676
POPTR_0010s04860
Populus trichocarpa
POPTR_0010s04860
I
0.676
PRUPE_ppa009283mg
Prunus persica
PRUPE_ppa009283mg
I
0.676
Sb03g006450
Sorghum bicolor
Sb03g006450
I
0.676
Solyc03g113620.2
Solanum lycopersicum
Solyc03g113620.2
I
0.676
Solyc04g005100.2
Solanum lycopersicum
Solyc04g005100.2
I
0.676
Solyc06g071230.2
Solanum lycopersicum
Solyc06g071230.2
I
0.676
TCM_013524
Theobroma cacao
TCM_013524
I
0.676
Traes_3AS_6626D4A69
Triticum aestivum
Traes_3AS_6626D4A69
I
0.676
Traes_3DS_8AF1A10AB
Triticum aestivum
Traes_3DS_8AF1A10AB
I
0.676
VIT_17s0000g07510
Vitis vinifera
VIT_17s0000g07510
I
0.676
Ca_17597
Cicer arietinum
Ca_17597
I
0.676
Pm024648
Prunus mume
Pm024648
I
0.676
30147.m014028
Ricinus communis
30147.m014028
I
0.676
cassava17572.valid.m1
Manihot esculenta
cassava17572.valid.m1
I
0.676
cassava23010.valid.m1
Manihot esculenta
cassava23010.valid.m1
I
0.676
cassava23011.valid.m1
Manihot esculenta
cassava23011.valid.m1
I
0.676
Cucsa.098110
Cucumis sativus
Cucsa.098110
I
0.676
Ciclev10021454m.g
Citrus clementina
Ciclev10021454m.g
I
0.676
evm.TU.supercontig_35.12
Carica papaya
evm.TU.supercontig_35.12
I
0.676
evm.TU.supercontig_5.314
Carica papaya
evm.TU.supercontig_5.314
I
0.676
Gorai.007G034000
Gossypium raimondii
Gorai.007G034000
I
0.676
Lus10004248.g
Linum usitatissimum
Lus10004248.g
I
0.676
Lus10036652.g
Linum usitatissimum
Lus10036652.g
I
0.676
MDP0000230601
Malus domestica
MDP0000230601
I
0.676
MDP0000758053
Malus domestica
MDP0000758053
I
0.676
orange1.1g022562m.g
Citrus sinensis
orange1.1g022562m.g
I
0.676
SapurV1A.0007s0060
Salix purpurea
SapurV1A.0007s0060
I
0.676
SapurV1A.0113s0280
Salix purpurea
SapurV1A.0113s0280
I
0.676
PK17526.1
Cannabis sativa
PK17526.1
D
0.676
chr2.CM0028.230.nd
Lotus japonicus
chr2.CM0028.230.nd
I
0.676
GLYMA05G01640
Glycine max
GLYMA05G01640
I
0.675
GLYMA17G10250
Glycine max
GLYMA17G10250
I
0.675
MTR_5g027550
Medicago truncatula
MTR_5g027550
N
0.673
GLYMA04G34720
Glycine max
GLYMA04G34720
I
0.667
GLYMA06G19960
Glycine max
GLYMA06G19960
I
0.667
MTR_4g107230
Medicago truncatula
MTR_4g107230
I
0.667
SELMODRAFT_84280
Selaginella moellendorffii
SELMODRAFT_84280
I
0.667
mgf003276m
Mimulus guttatus
mgf003276m
I
0.667
gene09510-v1.0-hybrid
Fragaria vesca
gene09510-v1.0-hybrid
I
0.667
LjSGA_014616.1
Lotus japonicus
LjSGA_014616.1
I
0.667
SELMODRAFT_439294
Selaginella moellendorffii
SELMODRAFT_439294
I
0.666
SELMODRAFT_445372
Selaginella moellendorffii
SELMODRAFT_445372
I
0.666
gw1.89.65.1
Physcomitrella patens
gw1.89.65.1
I
0.666
Eucgr.B00377
Eucalyptus grandis
Eucgr.B00377
I
0.666
chr6.CM0114.280.nc
Lotus japonicus
chr6.CM0114.280.nc
I
0.666
PK23829.1
Cannabis sativa
PK23829.1
D
0.665