CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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OB12G14410
(
Oryza brachyantha
)
Myb/SANT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00249 (Myb_DNA-binding)
IPR014778
OB12G14410
T275406_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
MYB98
M02301_2.00
Arabidopsis thaliana
NNGTAACGKMN
NKMCGTTACNN
PBM
Weirauch et al.(2014)
pTH8148
0.723
0.774
MYB98
M07108_2.00
Arabidopsis thaliana
DWWWHGTAACGKWHD
HDWMCGTTACDWWWH
Dap-seq
OMalley et al.(2016)
MYB98_col_a
0.723
0.774
For this family, TFs with SR scores >
0.661
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
OB12G14410.1
Myb
156
202
KGHWTLKEDRKLVKLVEQFGLKKWSQISGMLPGRVGKQCRERWFNHL
OB12G14410.1
Myb
208
253
KDTWSEEEDMVLIEIHKEVGNRWAEIAKRLHGRTENSIKNHWNATK
Links
Other
Myb/SANT
family TFs
Other
Oryza brachyantha
TFs
78 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
MYB98
Arabidopsis thaliana
AT4G18770
D
0.723
cassava33974.m1
Manihot esculenta
cassava33974.m1
I
0.747
Cucsa.196850
Cucumis sativus
Cucsa.196850
I
0.717
cassava19706.m1
Manihot esculenta
cassava19706.m1
I
0.677
30147.m013937
Ricinus communis
30147.m013937
I
0.702
Pm024743
Prunus mume
Pm024743
I
0.693
Cla019490
Citrullus lanatus
Cla019490
I
0.720
Ca_17087
Cicer arietinum
Ca_17087
I
0.669
Ca_07482
Cicer arietinum
Ca_07482
I
0.664
TRIUR3_12421
Triticum urartu
TRIUR3_12421
I
0.817
Traes_7DS_E27ECBC6E
Triticum aestivum
Traes_7DS_E27ECBC6E
I
0.786
Traes_7BS_D28CCE3B8
Triticum aestivum
Traes_7BS_D28CCE3B8
I
0.817
Traes_7AS_A337F362A
Triticum aestivum
Traes_7AS_A337F362A
I
0.817
Traes_1DL_918A8F357
Triticum aestivum
Traes_1DL_918A8F357
I
0.794
Traes_1BL_4D9406708
Triticum aestivum
Traes_1BL_4D9406708
I
0.787
TCM_012087
Theobroma cacao
TCM_012087
I
0.717
Si039046m.g
Setaria italica
Si039046m.g
I
0.743
MYB98
Arabidopsis lyrata
scaffold_702543.1
I
0.723
Sb01g005100
Sorghum bicolor
Sb01g005100
I
0.758
PRUPE_ppa026791mg
Prunus persica
PRUPE_ppa026791mg
I
0.693
Lus10039966.g
Linum usitatissimum
Lus10039966.g
I
0.662
Thhalv10026824m.g
Eutrema salsugineum
Thhalv10026824m.g
I
0.726
SapurV1A.2163s0040
Salix purpurea
SapurV1A.2163s0040
I
0.708
Pavir.J37434
Panicum virgatum
Pavir.J37434
I
0.755
Pavir.J25000
Panicum virgatum
Pavir.J25000
I
0.768
Pavir.J02718
Panicum virgatum
Pavir.J02718
I
0.784
Pavir.J02497
Panicum virgatum
Pavir.J02497
I
0.784
orange1.1g046859m.g
Citrus sinensis
orange1.1g046859m.g
I
0.677
MDP0000215359
Malus domestica
MDP0000215359
I
0.693
Lus10042111.g
Linum usitatissimum
Lus10042111.g
I
0.728
POPTR_0015s08880
Populus trichocarpa
POPTR_0015s08880
I
0.692
Lus10027695.g
Linum usitatissimum
Lus10027695.g
I
0.711
Lus10002384.g
Linum usitatissimum
Lus10002384.g
I
0.707
Gorai.008G295800
Gossypium raimondii
Gorai.008G295800
I
0.717
gene32198-v1.0-hybrid
Fragaria vesca
gene32198-v1.0-hybrid
I
0.677
Eucgr.B00301
Eucalyptus grandis
Eucgr.B00301
I
0.738
Ciclev10024427m.g
Citrus clementina
Ciclev10024427m.g
I
0.677
Carubv10006734m.g
Capsella rubella
Carubv10006734m.g
I
0.723
Cagra.4306s0015
Capsella grandiflora
Cagra.4306s0015
I
0.723
Bostr.30275s0352
Boechera stricta
Bostr.30275s0352
I
0.723
F775_22212
Aegilops tauschii
F775_22212
I
0.817
MTR_3g077650
Medicago truncatula
MTR_3g077650
I
0.686
LPERR12G04190
Leersia perrieri
LPERR12G04190
I
0.848
LPERR06G03780
Leersia perrieri
LPERR06G03780
I
0.782
GSMUA_Achr6G06490_001
Musa acuminata
GSMUA_Achr6G06490_001
I
0.675
GSMUA_Achr3G19490_001
Musa acuminata
GSMUA_Achr3G19490_001
I
0.702
GRMZM5G870592
Zea mays
GRMZM5G870592
I
0.752
GRMZM2G302549
Zea mays
GRMZM2G302549
I
0.743
GLYMA06G19280
Glycine max
GLYMA06G19280
I
0.718
GLYMA05G02300
Glycine max
GLYMA05G02300
I
0.675
MTR_5g049190
Medicago truncatula
MTR_5g049190
I
0.702
Bra020992
Brassica rapa
Bra020992
I
0.717
Bra013346
Brassica rapa
Bra013346
I
0.723
Bra012579
Brassica rapa
Bra012579
I
0.685
Bo7g106240
Brassica oleracea
Bo7g106240
I
0.698
Bo3g157300
Brassica oleracea
Bo3g157300
I
0.726
Bo1g019910
Brassica oleracea
Bo1g019910
I
0.723
BGIOSGA036541
Oryza indica
BGIOSGA036541
I
0.867
BGIOSGA022369
Oryza indica
BGIOSGA022369
I
0.790
OMERI06G04840
Oryza meridionalis
OMERI06G04840
I
0.790
ORUFI12G05180
Oryza rufipogon
ORUFI12G05180
I
0.858
ORUFI06G04170
Oryza rufipogon
ORUFI06G04170
I
0.790
ORGLA12G0042300
Oryza glaberrima
ORGLA12G0042300
I
0.867
ORGLA06G0038500
Oryza glaberrima
ORGLA06G0038500
I
0.790
OPUNC12G04510
Oryza punctata
OPUNC12G04510
I
0.858
OPUNC06G03990
Oryza punctata
OPUNC06G03990
I
0.790
ONIVA12G04220
Oryza nivara
ONIVA12G04220
I
0.867
ONIVA06G05390
Oryza nivara
ONIVA06G05390
I
0.790
OMERI12G02760
Oryza meridionalis
OMERI12G02760
I
0.867
OS06G0162700
Oryza sativa
OS06G0162700
I
0.790
OLONG_010000
Oryza longistaminata
OLONG_010000
I
0.790
OLONG_008158
Oryza longistaminata
OLONG_008158
I
0.867
OGLUM12G05330
Oryza glumaepatula
OGLUM12G05330
I
0.867
OGLUM06G04280
Oryza glumaepatula
OGLUM06G04280
I
0.790
OBART12G04500
Oryza barthii
OBART12G04500
I
0.867
OBART12G04480
Oryza barthii
OBART12G04480
I
0.867
OBART06G04170
Oryza barthii
OBART06G04170
I
0.790
OB06G13860
Oryza brachyantha
OB06G13860
I
0.799